PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA45969 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA45970 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA46030 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA46031 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA46724 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA47362 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA47363 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA47493 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA47494 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA47622 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA47788 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA47789 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA47791 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA48517 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA48631 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA48633 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA48734 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA48736 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA48737 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA48738 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA48739 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA49088 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA49266 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA49560 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA49561 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA49661 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA49879 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA50058 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA50159 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA5040 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA50401 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA50530 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA50679 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA51222 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA51223 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51442 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA51445 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51692 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51769 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA51772 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA51775 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51818 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51819 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51821 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51822 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA51829 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA52121 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA52156 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA52157 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA52158 Flavonoid UFGT medium pass