PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA44698 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA44699 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA44700 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA44701 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA45191 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA46207 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA47620 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA47623 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA47635 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA47779 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA51581 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA58724 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA59099 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA59100 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA61279 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA61281 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA61643 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA6622 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA69878 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA69881 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA69883 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA72286 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA72289 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA74906 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA74944 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA74945 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA75439 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA76447 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA77848 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA77851 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA77862 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA81239 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA84927 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA85090 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA85092 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA86486 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA87473 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA87957 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA89310 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA90818 Steroid CYP51G1 medium borderline
rhynchospora_pubera_mRNA11989 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA13739 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA14046 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA17071 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA17321 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19736 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19738 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA19968 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA2010 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA20426 Steroid CYP90D1 low borderline