PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA64502 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64588 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64590 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64591 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64592 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64593 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64594 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64595 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64913 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64914 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64915 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64916 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64917 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64918 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64919 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64920 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64921 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64922 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA64923 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64924 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64925 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64976 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64977 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA64978 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA65004 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA65005 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA65154 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA65235 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA65237 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA65720 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66214 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA66535 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA66536 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA66537 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA66538 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA66539 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66540 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66541 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66550 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA66561 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66562 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66564 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA66796 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA67121 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA67122 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA67254 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA67255 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA67297 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA67339 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA67349 Alkaloid 7DLGT medium pass