PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA23430 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA24397 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA24545 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA24569 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA25219 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA25296 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA25578 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA25582 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA26963 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA26964 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA26966 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA26969 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA27545 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA28001 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA2827 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA2882 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA28880 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA28882 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA2946 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA29835 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA29836 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30346 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30347 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30407 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30520 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30549 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30909 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30910 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA30916 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA31129 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA31226 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA31989 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32365 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA32513 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32752 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32755 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32756 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32765 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA32767 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA33048 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA33927 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA34429 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA34431 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA34432 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA34498 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA35067 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA35077 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA35143 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA35250 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA35423 Flavonoid F3'H/CYP75B medium borderline