PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA56046 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA56048 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA56049 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA56253 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA56811 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA56812 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA5843 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA63796 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA64318 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA64413 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA64414 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA64416 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA64483 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA65523 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA66025 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA66570 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA66755 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA67623 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA68732 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA70067 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA70485 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA70921 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA72795 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA74690 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA74943 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76010 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76024 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76027 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76028 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76217 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA76358 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA78225 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA79399 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA81095 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA81431 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA81432 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA81435 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA81513 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA82240 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA82246 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA83325 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA83589 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA84709 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA86577 Steroid CYP90D1 medium borderline
rhynchospora_pubera_mRNA86711 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA86906 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA86907 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA86908 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA86909 Steroid CYP90D1 low borderline
rhynchospora_pubera_mRNA86924 Steroid CYP90D1 low borderline