PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA87390 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA87772 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA87909 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA87910 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88466 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88541 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88560 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88561 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88594 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88595 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88596 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88597 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA88730 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88731 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA88788 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA89155 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA90199 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA90380 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA91167 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA13705 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA13739 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA1546 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA15827 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA18612 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19208 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19209 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19210 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19219 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA19968 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA24377 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA25582 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA29587 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA31408 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA32037 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA32365 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA35659 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA36539 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38215 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38216 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38956 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38963 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38966 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA38968 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA40659 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA4153 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA44451 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA46256 Alkaloid 7DLH low borderline
rhynchospora_pubera_mRNA46892 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA47225 Alkaloid 7DLH medium borderline
rhynchospora_pubera_mRNA51422 Alkaloid 7DLH medium borderline