PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA58892 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA58998 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59067 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59086 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59100 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59954 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59956 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA59959 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA60019 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA60363 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA60426 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA60428 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA60836 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA61304 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA61374 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA61375 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA61475 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA61643 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA62051 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA62677 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA62732 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA63551 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA63766 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA64280 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA64317 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA64318 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA64319 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA64371 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA64413 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA64414 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA64483 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA64546 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA65058 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA65518 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA65700 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA65703 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA66025 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA66570 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA66753 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA66755 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA67620 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA67623 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA68154 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA68799 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA69806 Flavonoid F3'H/CYP75B low borderline
rhynchospora_pubera_mRNA69878 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA69881 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA69883 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA69905 Flavonoid F3'H/CYP75B medium borderline
rhynchospora_pubera_mRNA70557 Flavonoid F3'H/CYP75B medium borderline