PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA90156 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90157 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90332 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90373 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90516 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90551 Terpenoid BAHD low borderline
rhynchospora_pubera_mRNA90616 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA90942 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA91032 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA91033 Terpenoid BAHD medium pass
rhynchospora_pubera_mRNA15507 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA24742 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA32520 Terpenoid CMK/IspE high pass
rhynchospora_pubera_mRNA35969 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA47380 Terpenoid CMK/IspE high pass
rhynchospora_pubera_mRNA47384 Terpenoid CMK/IspE high pass
rhynchospora_pubera_mRNA51773 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA58166 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA62115 Terpenoid CMK/IspE low borderline
rhynchospora_pubera_mRNA77606 Terpenoid CMK/IspE high pass
rhynchospora_pubera_mRNA85330 Terpenoid CMK/IspE high pass
rhynchospora_pubera_mRNA13107 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA13929 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA14250 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA14856 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA14863 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA14916 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA15146 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA16413 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA16453 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA16464 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA17321 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA17565 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA17987 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA18301 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA18990 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA19169 Terpenoid CYP71 low borderline
rhynchospora_pubera_mRNA19872 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA19873 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA19968 Terpenoid CYP71 low borderline
rhynchospora_pubera_mRNA20390 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA20407 Terpenoid CYP71 medium pass
rhynchospora_pubera_mRNA20425 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA20426 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA21319 Terpenoid CYP71 low borderline
rhynchospora_pubera_mRNA21492 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA21493 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA22279 Terpenoid CYP71 medium borderline
rhynchospora_pubera_mRNA23359 Terpenoid CYP71 low borderline
rhynchospora_pubera_mRNA23430 Terpenoid CYP71 medium borderline