PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA45769 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA46207 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA47923 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA48814 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA50305 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA55679 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA59956 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA60163 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA60215 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA63795 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA68583 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA76025 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA76447 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA78152 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA78969 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA79011 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA82389 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA84781 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA85078 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA86486 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA86901 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA88915 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA89806 Phenylpropanoid F5H/CYP84A medium borderline
rhynchospora_pubera_mRNA1131 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA13371 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA16651 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA1675 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA1676 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA16836 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA17532 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA1767 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA17774 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA19508 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA19575 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA19580 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA19581 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA19648 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA19815 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA21283 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA21284 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA21674 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA22485 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA22720 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA22827 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA23972 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA24029 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA24966 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26132 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26198 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26217 Phenylpropanoid HCT medium pass