PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA26249 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26250 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26251 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26255 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26257 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26258 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA26838 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA27341 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA27783 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA30493 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA31337 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA33042 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA33211 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA33896 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA33897 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA33899 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA33900 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA34844 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA36824 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA37206 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA37473 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA37474 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA38372 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA38533 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA38602 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA38603 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA38608 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA38671 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA39203 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA40453 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA40454 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA40829 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA41672 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA42197 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA42634 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA4400 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA45332 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA46184 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA47918 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA48110 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA48784 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA48785 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA48787 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA48788 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA49562 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA49798 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA49904 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA51242 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA51301 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA52680 Phenylpropanoid HCT low borderline