PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA53029 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53098 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53129 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53131 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53132 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53134 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53135 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53136 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53578 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA53719 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53721 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA53723 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA54019 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA54020 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA55268 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA55974 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA55975 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA55981 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA56121 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA57016 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA57288 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA57679 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA59317 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA61061 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA63332 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA63583 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA63584 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA64488 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA64624 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA64698 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA64699 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA64703 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA64760 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA65284 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA66543 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA66544 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA66941 Phenylpropanoid HCT low borderline
rhynchospora_pubera_mRNA67081 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA67082 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA68057 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA68167 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA69393 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA69394 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71481 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71537 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71550 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71584 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71585 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71588 Phenylpropanoid HCT medium pass
rhynchospora_pubera_mRNA71589 Phenylpropanoid HCT medium pass