PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA19844 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA19845 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA19846 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA20127 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20441 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20442 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20445 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA20518 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA21707 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA22363 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA22921 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24156 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24158 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24277 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24278 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24442 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24444 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24445 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24686 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA24832 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24834 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24835 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24838 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24958 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA24961 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA25191 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA25370 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA25543 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA26092 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA26095 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA28933 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA28934 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA29314 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA29468 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30187 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30188 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30189 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA30222 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31018 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31170 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31171 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31172 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA31173 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31174 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA31183 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA31625 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA32337 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA33216 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA33293 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA33354 Flavonoid F3H medium borderline