PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA35999 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36153 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36288 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36374 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36447 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36448 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36489 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA36921 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA37502 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA37707 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38328 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38329 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA38978 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA39624 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA40092 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA42092 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA42306 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA43121 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA43299 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA44588 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA44589 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45233 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45789 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA45848 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA46034 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46393 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46394 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA46772 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA46793 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA48759 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA48760 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA49262 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA49392 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA49715 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA50276 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA53253 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA54386 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA54849 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA56167 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA56169 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA56826 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA57584 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA57738 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA57867 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA57950 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA58135 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA58162 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA58413 Rosmarinic Acid 4CL medium pass
rhynchospora_pubera_mRNA60179 Rosmarinic Acid 4CL low borderline
rhynchospora_pubera_mRNA60202 Rosmarinic Acid 4CL low borderline