PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA51999 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA52000 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA52001 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA52002 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA70295 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA70296 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA70298 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA76014 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA76015 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA81709 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA81710 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA81711 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA86918 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA86919 Rosmarinic Acid HPPR medium pass
rhynchospora_pubera_mRNA13718 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA18633 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA18881 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA24534 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA24715 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA36520 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51571 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51572 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA51746 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA59595 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA60790 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA62278 Rosmarinic Acid PAL low borderline
rhynchospora_pubera_mRNA62656 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA69868 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA69869 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA70042 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA81230 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA81409 Rosmarinic Acid PAL high pass
rhynchospora_pubera_mRNA13959 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA16138 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA16651 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA1676 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA17532 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA17774 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA18860 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA19124 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA19575 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA19815 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA21284 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA21674 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA22485 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA23972 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA24029 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA24846 Rosmarinic Acid RAS low borderline
rhynchospora_pubera_mRNA24966 Rosmarinic Acid RAS medium pass
rhynchospora_pubera_mRNA25926 Rosmarinic Acid RAS low borderline