PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA56412 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA56979 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA56983 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA57676 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA57688 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA57921 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58098 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58199 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58296 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58316 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA58318 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA58320 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA58321 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA58323 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA58345 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA58942 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58944 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58965 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA58966 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA59377 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA59379 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA59747 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA61002 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61406 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61407 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61427 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61429 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61934 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA61954 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61955 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61956 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA61958 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA61959 Flavonoid F3H medium pass
rhynchospora_pubera_mRNA61981 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62079 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62175 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62484 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62953 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA62961 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA63614 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA63619 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64163 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA64516 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64517 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64518 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64519 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA64520 Flavonoid F3H low borderline
rhynchospora_pubera_mRNA65437 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65438 Flavonoid F3H medium borderline
rhynchospora_pubera_mRNA65439 Flavonoid F3H medium borderline