PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA85194 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA85341 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA85742 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA85806 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA85857 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA86309 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA86312 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA86462 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA86463 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA86609 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA87274 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA87280 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA87299 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA89019 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA89643 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA89644 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA89645 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA89670 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA90771 Steroid DWF4/CYP90B1 medium borderline
rhynchospora_pubera_mRNA90772 Steroid DWF4/CYP90B1 low borderline
rhynchospora_pubera_mRNA30397 Steroid DWF5 medium pass
rhynchospora_pubera_mRNA45241 Steroid DWF5 medium borderline
rhynchospora_pubera_mRNA75489 Steroid DWF5 medium borderline
rhynchospora_pubera_mRNA87421 Steroid DWF5 medium borderline
rhynchospora_pubera_mRNA30744 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA30745 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA45585 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA45586 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA75840 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA75841 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA87091 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA87092 Steroid DWF7 medium pass
rhynchospora_pubera_mRNA17510 Steroid FK low borderline
rhynchospora_pubera_mRNA28895 Steroid FK high pass
rhynchospora_pubera_mRNA43748 Steroid FK high pass
rhynchospora_pubera_mRNA74213 Steroid FK high pass
rhynchospora_pubera_mRNA88901 Steroid FK high pass
rhynchospora_pubera_mRNA1712 Steroid HYD1 high pass
rhynchospora_pubera_mRNA22441 Steroid HYD1 high pass
rhynchospora_pubera_mRNA3960 Steroid HYD1 high pass
rhynchospora_pubera_mRNA48006 Steroid HYD1 high pass
rhynchospora_pubera_mRNA49519 Steroid HYD1 high pass
rhynchospora_pubera_mRNA67775 Steroid HYD1 high pass
rhynchospora_pubera_mRNA78229 Steroid HYD1 high pass
rhynchospora_pubera_mRNA83179 Steroid HYD1 high pass
rhynchospora_pubera_mRNA84705 Steroid HYD1 high pass
rhynchospora_pubera_mRNA21208 Steroid ROT3/CYP90C1 medium borderline
rhynchospora_pubera_mRNA22136 Steroid ROT3/CYP90C1 medium borderline
rhynchospora_pubera_mRNA22459 Steroid ROT3/CYP90C1 medium borderline
rhynchospora_pubera_mRNA30520 Steroid ROT3/CYP90C1 medium borderline