PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA25862 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27377 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
rhynchospora_pubera_mRNA27380 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
rhynchospora_pubera_mRNA27533 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27534 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27535 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27536 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27537 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27538 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA27539 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA28508 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA28510 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA28623 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA30337 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31674 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31675 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31676 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
rhynchospora_pubera_mRNA31677 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA31726 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31727 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31728 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31729 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31730 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31731 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31732 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31733 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA31836 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32418 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32419 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA32477 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA32588 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA34158 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA34159 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA34160 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA34346 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA34450 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA36839 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA37112 Phenylpropanoid CAD low borderline CAD__00007__sp_O24562_CADH_MAIZE
rhynchospora_pubera_mRNA38315 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA38400 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA38401 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
rhynchospora_pubera_mRNA38511 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
rhynchospora_pubera_mRNA38515 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
rhynchospora_pubera_mRNA38936 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
rhynchospora_pubera_mRNA39618 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA40656 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA41204 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA42231 Phenylpropanoid CAD low borderline CAD__00001__sp_A0A072VPZ8_CAD1_MEDTR
rhynchospora_pubera_mRNA42383 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
rhynchospora_pubera_mRNA42384 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM