PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status Best Target
rhynchospora_pubera_mRNA27012 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
rhynchospora_pubera_mRNA27399 Terpenoid CYP76 low borderline CYP76__00014__sp_I3PFJ5_C76AD_BETVU
rhynchospora_pubera_mRNA28001 Terpenoid CYP76 medium pass CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
rhynchospora_pubera_mRNA28113 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA28136 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA28137 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA28196 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA28770 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA29837 Terpenoid CYP76 low borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
rhynchospora_pubera_mRNA29957 Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
rhynchospora_pubera_mRNA30078 Terpenoid CYP76 low borderline CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
rhynchospora_pubera_mRNA30079 Terpenoid CYP76 medium pass CYP76__00024__sp_W0FKI0_DOX1_PERHD
rhynchospora_pubera_mRNA30298 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA30299 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA30346 Terpenoid CYP76 medium pass CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
rhynchospora_pubera_mRNA30407 Terpenoid CYP76 medium pass CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA30520 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA30910 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
rhynchospora_pubera_mRNA31129 Terpenoid CYP76 low borderline CYP76__00014__sp_I3PFJ5_C76AD_BETVU
rhynchospora_pubera_mRNA31366 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA31534 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA31933 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA32098 Terpenoid CYP76 low borderline CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
rhynchospora_pubera_mRNA32380 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA32513 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA3274 Terpenoid CYP76 low borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
rhynchospora_pubera_mRNA32764 Terpenoid CYP76 medium borderline CYP76__00016__sp_P0DXJ6_C7631_LOPWI
rhynchospora_pubera_mRNA32875 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA33048 Terpenoid CYP76 medium pass CYP76__00023__sp_S4UX02_CYPH1_SALMI
rhynchospora_pubera_mRNA33892 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA34008 Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA34009 Terpenoid CYP76 medium borderline CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
rhynchospora_pubera_mRNA34652 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA35053 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA35054 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA35055 Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
rhynchospora_pubera_mRNA35067 Terpenoid CYP76 medium borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
rhynchospora_pubera_mRNA35077 Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
rhynchospora_pubera_mRNA35143 Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA35318 Terpenoid CYP76 medium borderline CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
rhynchospora_pubera_mRNA35320 Terpenoid CYP76 medium borderline CYP76__00013__sp_D1MI46_C76BA_SWEMU
rhynchospora_pubera_mRNA35321 Terpenoid CYP76 medium pass CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA35322 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA35323 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
rhynchospora_pubera_mRNA35416 Terpenoid CYP76 medium borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
rhynchospora_pubera_mRNA35417 Terpenoid CYP76 low borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
rhynchospora_pubera_mRNA35423 Terpenoid CYP76 medium borderline CYP76__00023__sp_S4UX02_CYPH1_SALMI
rhynchospora_pubera_mRNA3560 Terpenoid CYP76 low borderline CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
rhynchospora_pubera_mRNA35915 Terpenoid CYP76 low borderline CYP76__00024__sp_W0FKI0_DOX1_PERHD
rhynchospora_pubera_mRNA35949 Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU