PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA75608 Alkaloid COR medium pass
rhynchospora_pubera_mRNA75609 Alkaloid COR medium pass
rhynchospora_pubera_mRNA75611 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77321 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77322 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77323 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77324 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77327 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77328 Alkaloid COR medium pass
rhynchospora_pubera_mRNA77509 Alkaloid COR medium pass
rhynchospora_pubera_mRNA80267 Alkaloid COR medium pass
rhynchospora_pubera_mRNA83117 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85439 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85607 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85608 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85609 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85610 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85611 Alkaloid COR medium pass
rhynchospora_pubera_mRNA85612 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87308 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87310 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87311 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87313 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87315 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87316 Alkaloid COR medium pass
rhynchospora_pubera_mRNA87317 Alkaloid COR medium pass
rhynchospora_pubera_mRNA90323 Alkaloid COR medium pass
rhynchospora_pubera_mRNA16338 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA16339 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA17733 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA19966 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA32098 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA32510 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA35143 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA40339 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA46952 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA47369 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA48003 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA58998 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA61374 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA61375 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA61785 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA77184 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA77597 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA78225 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA84709 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA85341 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA85742 Alkaloid CYP719 medium borderline
rhynchospora_pubera_mRNA13530 Alkaloid CYP80B1 low borderline
rhynchospora_pubera_mRNA15527 Alkaloid CYP80B1 medium borderline