PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA19778 Alkaloid CYP80B1 low borderline
rhynchospora_pubera_mRNA21195 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA35949 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA38411 Alkaloid CYP80B1 low borderline
rhynchospora_pubera_mRNA40364 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA47373 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA54103 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA56084 Alkaloid CYP80B1 low borderline
rhynchospora_pubera_mRNA58186 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA62092 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA64450 Alkaloid CYP80B1 low borderline
rhynchospora_pubera_mRNA66465 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA72721 Alkaloid CYP80B1 medium borderline
rhynchospora_pubera_mRNA35898 Alkaloid CYP80F1 low borderline
rhynchospora_pubera_mRNA53654 Alkaloid CYP80F1 low borderline
rhynchospora_pubera_mRNA62031 Alkaloid CYP80F1 low borderline
rhynchospora_pubera_mRNA67464 Alkaloid CYP80F1 medium borderline
rhynchospora_pubera_mRNA12746 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA13802 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA16164 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA16165 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA16429 Alkaloid G8O/G8H medium pass
rhynchospora_pubera_mRNA17035 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA17324 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA17657 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA19737 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA25217 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA25578 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA26965 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA30915 Alkaloid G8O/G8H medium pass
rhynchospora_pubera_mRNA3274 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA34008 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA35068 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA35318 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA35320 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA35321 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA37429 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA38176 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA38178 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA39617 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA40557 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA46230 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA52252 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA52305 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA52455 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA52780 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA53358 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA55679 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA56047 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA56287 Alkaloid G8O/G8H low borderline