PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA5844 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA5845 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA5846 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA58826 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA58827 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA59085 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA60164 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA61539 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA64279 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA65099 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA65488 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA70602 Alkaloid G8O/G8H low borderline
rhynchospora_pubera_mRNA70917 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA76472 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA76626 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA81517 Alkaloid G8O/G8H medium borderline
rhynchospora_pubera_mRNA1284 Alkaloid GES medium pass
rhynchospora_pubera_mRNA13072 Alkaloid GES medium pass
rhynchospora_pubera_mRNA19871 Alkaloid GES medium pass
rhynchospora_pubera_mRNA20018 Alkaloid GES medium pass
rhynchospora_pubera_mRNA20402 Alkaloid GES medium pass
rhynchospora_pubera_mRNA20403 Alkaloid GES medium pass
rhynchospora_pubera_mRNA20404 Alkaloid GES medium pass
rhynchospora_pubera_mRNA20405 Alkaloid GES medium pass
rhynchospora_pubera_mRNA21491 Alkaloid GES medium pass
rhynchospora_pubera_mRNA21615 Alkaloid GES medium pass
rhynchospora_pubera_mRNA21975 Alkaloid GES medium pass
rhynchospora_pubera_mRNA25668 Alkaloid GES medium pass
rhynchospora_pubera_mRNA25861 Alkaloid GES medium pass
rhynchospora_pubera_mRNA25862 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27533 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27534 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27535 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27536 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27537 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27538 Alkaloid GES medium pass
rhynchospora_pubera_mRNA27539 Alkaloid GES medium pass
rhynchospora_pubera_mRNA28508 Alkaloid GES medium pass
rhynchospora_pubera_mRNA29685 Alkaloid GES medium pass
rhynchospora_pubera_mRNA32477 Alkaloid GES medium pass
rhynchospora_pubera_mRNA33333 Alkaloid GES medium pass
rhynchospora_pubera_mRNA38167 Alkaloid GES medium pass
rhynchospora_pubera_mRNA38315 Alkaloid GES medium pass
rhynchospora_pubera_mRNA39596 Alkaloid GES medium pass
rhynchospora_pubera_mRNA39597 Alkaloid GES medium pass
rhynchospora_pubera_mRNA39618 Alkaloid GES medium pass
rhynchospora_pubera_mRNA40656 Alkaloid GES medium pass
rhynchospora_pubera_mRNA40774 Alkaloid GES medium pass
rhynchospora_pubera_mRNA41204 Alkaloid GES medium pass
rhynchospora_pubera_mRNA42379 Alkaloid GES medium pass