PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA63795 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA64340 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA65098 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA65488 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA65523 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA66116 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA66686 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA67436 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA67464 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA69832 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA71621 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA72287 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA75436 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA76009 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA76025 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA76447 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA76472 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA77352 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA79071 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA81191 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA83503 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA85581 Flavonoid FNS low borderline
rhynchospora_pubera_mRNA86463 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA86486 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA87475 Flavonoid FNS medium borderline
rhynchospora_pubera_mRNA1185 Flavonoid IFR high pass
rhynchospora_pubera_mRNA13707 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA16552 Flavonoid IFR medium pass
rhynchospora_pubera_mRNA17554 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA17746 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA17765 Flavonoid IFR high pass
rhynchospora_pubera_mRNA18620 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA18927 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA19348 Flavonoid IFR high pass
rhynchospora_pubera_mRNA19349 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21059 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA21161 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21162 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21506 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21508 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21514 Flavonoid IFR high pass
rhynchospora_pubera_mRNA21518 Flavonoid IFR high pass
rhynchospora_pubera_mRNA22392 Flavonoid IFR high pass
rhynchospora_pubera_mRNA27647 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA28236 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA28648 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA29396 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA30643 Flavonoid IFR high pass
rhynchospora_pubera_mRNA31620 Flavonoid IFR low borderline
rhynchospora_pubera_mRNA31791 Flavonoid IFR low borderline