PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

/

Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA58966 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA59377 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA59379 Alkaloid H6H high pass
rhynchospora_pubera_mRNA59747 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA59748 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA59749 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA60634 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA60635 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA61002 Alkaloid H6H high pass
rhynchospora_pubera_mRNA61406 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA61407 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA61429 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA62175 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA62484 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA64517 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA64518 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA64519 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA64520 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA65243 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA65244 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA65437 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA65721 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA65722 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA65723 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA65797 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA68271 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA68986 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA69622 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA69780 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA70530 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA74990 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA75280 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA75282 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA75283 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA75284 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA75317 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA75725 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA76270 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA77434 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA77481 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA79107 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA7929 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA79350 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA79833 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA80263 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA80866 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA80979 Alkaloid H6H medium borderline
rhynchospora_pubera_mRNA81993 Alkaloid H6H low borderline
rhynchospora_pubera_mRNA82683 Alkaloid H6H medium pass
rhynchospora_pubera_mRNA83642 Alkaloid H6H medium borderline