PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA6255 Terpenoid MCT/IspD high pass
rhynchospora_pubera_mRNA68300 Terpenoid MCT/IspD high pass
rhynchospora_pubera_mRNA73848 Terpenoid MCT/IspD low borderline
rhynchospora_pubera_mRNA82653 Terpenoid MCT/IspD high pass
rhynchospora_pubera_mRNA89271 Terpenoid MCT/IspD low borderline
rhynchospora_pubera_mRNA15414 Terpenoid MDS/IspF high pass
rhynchospora_pubera_mRNA36057 Terpenoid MDS/IspF high pass
rhynchospora_pubera_mRNA58071 Terpenoid MDS/IspF high pass
rhynchospora_pubera_mRNA62204 Terpenoid MDS/IspF high pass
rhynchospora_pubera_mRNA13880 Terpenoid MVD medium pass
rhynchospora_pubera_mRNA22605 Terpenoid MVD medium pass
rhynchospora_pubera_mRNA28446 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA29265 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA32027 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA43310 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA44123 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA46882 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA49681 Terpenoid MVD medium pass
rhynchospora_pubera_mRNA67938 Terpenoid MVD medium pass
rhynchospora_pubera_mRNA73772 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA77114 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA83017 Terpenoid MVD medium pass
rhynchospora_pubera_mRNA85818 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA88534 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA89353 Terpenoid MVD low borderline
rhynchospora_pubera_mRNA15085 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA19076 Terpenoid MVK medium pass
rhynchospora_pubera_mRNA31788 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA39108 Terpenoid MVK medium pass
rhynchospora_pubera_mRNA46642 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA55387 Terpenoid MVK medium pass
rhynchospora_pubera_mRNA59728 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA60658 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA65200 Terpenoid MVK medium pass
rhynchospora_pubera_mRNA6649 Terpenoid MVK medium pass
rhynchospora_pubera_mRNA76878 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA80202 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA86060 Terpenoid MVK low borderline
rhynchospora_pubera_mRNA14335 Terpenoid PMK medium pass
rhynchospora_pubera_mRNA18360 Terpenoid PMK medium pass
rhynchospora_pubera_mRNA27719 Terpenoid PMK low borderline
rhynchospora_pubera_mRNA36622 Terpenoid PMK medium pass
rhynchospora_pubera_mRNA42564 Terpenoid PMK low borderline
rhynchospora_pubera_mRNA62764 Terpenoid PMK medium pass
rhynchospora_pubera_mRNA73028 Terpenoid PMK low borderline
rhynchospora_pubera_mRNA90100 Terpenoid PMK low borderline
rhynchospora_pubera_mRNA1284 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA13072 Terpenoid TPS medium pass
rhynchospora_pubera_mRNA14 Terpenoid TPS low borderline
rhynchospora_pubera_mRNA19871 Terpenoid TPS medium pass