PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA58604 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA58825 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA58826 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA58827 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA58828 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA58830 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA59084 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA59098 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA59099 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA60005 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA60006 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA60163 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA60215 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA60378 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA60379 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA61278 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61279 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61280 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61281 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61282 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61295 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61297 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61539 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61540 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61634 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA61677 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA61784 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA61785 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA61786 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA62353 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA62358 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA63059 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA63644 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA63796 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA64279 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA64297 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA64416 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA64484 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA64485 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA65042 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65043 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65044 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65045 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65046 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65049 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65050 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65051 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65053 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65054 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA65055 Flavonoid IFS low borderline