PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA89608 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89644 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89645 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA89670 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89671 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA89695 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA90327 Flavonoid IFS low borderline
rhynchospora_pubera_mRNA90771 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA90773 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA9625 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA9705 Flavonoid IFS medium borderline
rhynchospora_pubera_mRNA13718 Flavonoid PAL high pass
rhynchospora_pubera_mRNA18633 Flavonoid PAL high pass
rhynchospora_pubera_mRNA18881 Flavonoid PAL high pass
rhynchospora_pubera_mRNA24534 Flavonoid PAL high pass
rhynchospora_pubera_mRNA24715 Flavonoid PAL high pass
rhynchospora_pubera_mRNA36520 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51571 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51572 Flavonoid PAL high pass
rhynchospora_pubera_mRNA51746 Flavonoid PAL high pass
rhynchospora_pubera_mRNA59595 Flavonoid PAL high pass
rhynchospora_pubera_mRNA60790 Flavonoid PAL high pass
rhynchospora_pubera_mRNA62278 Flavonoid PAL low borderline
rhynchospora_pubera_mRNA62656 Flavonoid PAL high pass
rhynchospora_pubera_mRNA69868 Flavonoid PAL high pass
rhynchospora_pubera_mRNA69869 Flavonoid PAL high pass
rhynchospora_pubera_mRNA70042 Flavonoid PAL high pass
rhynchospora_pubera_mRNA81230 Flavonoid PAL high pass
rhynchospora_pubera_mRNA81409 Flavonoid PAL high pass
rhynchospora_pubera_mRNA10184 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA1060 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA12565 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA13197 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA13315 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA13428 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA14080 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA14448 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA14524 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA14892 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA14895 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA15737 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA16584 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA16585 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA17141 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18219 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18239 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA18259 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18260 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18261 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA18387 Flavonoid UFGT medium pass