PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA21289 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA21302 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA21303 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA21532 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA21535 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA21947 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA21948 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA21993 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22034 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22035 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22179 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22482 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22483 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA22587 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA22800 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA22970 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA23077 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA23490 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA23649 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24048 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24049 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24400 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24401 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24402 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24403 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA24666 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24740 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24741 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA24744 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24788 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24789 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24791 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA24792 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25082 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25122 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25123 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25178 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25207 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25603 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25604 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25605 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25648 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25709 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA25801 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA25960 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA26174 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA26345 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA26618 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA27417 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA27606 Flavonoid UFGT high pass