PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA79480 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA799 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA800 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA80027 Alkaloid NMT medium borderline
rhynchospora_pubera_mRNA80147 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA80380 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA80394 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA80712 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA80758 Alkaloid NMT medium borderline
rhynchospora_pubera_mRNA80900 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA81450 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA82393 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA83026 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA83366 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA83582 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA84692 Alkaloid NMT medium borderline
rhynchospora_pubera_mRNA85375 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA85376 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA86563 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA86800 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA87282 Alkaloid NMT medium borderline
rhynchospora_pubera_mRNA87339 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA87351 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA87352 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA87439 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA87979 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA88139 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA88493 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA88789 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA89137 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA89164 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA89175 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA89574 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA89620 Alkaloid NMT low borderline
rhynchospora_pubera_mRNA89673 Alkaloid NMT medium borderline
rhynchospora_pubera_mRNA91092 Alkaloid NMT medium pass
rhynchospora_pubera_mRNA57402 Alkaloid ODC low borderline
rhynchospora_pubera_mRNA63218 Alkaloid ODC low borderline
rhynchospora_pubera_mRNA1131 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA13371 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA16651 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA1675 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA1676 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA17532 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA17774 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19508 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA19575 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19580 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA19581 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA20966 Alkaloid PMT medium borderline