PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA71590 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA73095 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA73554 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA76276 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA76419 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA76481 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA77754 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA78973 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA78974 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA78976 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA79423 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79424 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79425 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79429 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79460 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79473 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79530 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA79871 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA80310 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA80690 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA80748 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA80749 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA82897 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA83134 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA83961 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA83963 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA83964 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA85183 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA86453 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA86454 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA86513 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA86652 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA8801 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA8802 Alkaloid PMT medium pass
rhynchospora_pubera_mRNA89570 Alkaloid PMT medium borderline
rhynchospora_pubera_mRNA90034 Alkaloid PMT low borderline
rhynchospora_pubera_mRNA12118 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA12900 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA13035 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA13326 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA14965 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA14966 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA14967 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA14968 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA15048 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA15411 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA15674 Alkaloid PYKS high pass
rhynchospora_pubera_mRNA15675 Alkaloid PYKS medium pass
rhynchospora_pubera_mRNA15858 Alkaloid PYKS low borderline
rhynchospora_pubera_mRNA15930 Alkaloid PYKS high pass