PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA59540 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA59542 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA59543 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA59925 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA59927 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA60455 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA60458 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA60843 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA60844 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA61125 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA61881 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA62590 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA62736 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA62858 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA62859 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA62878 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA62902 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64223 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64328 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64501 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64502 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64588 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64590 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64592 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64593 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64594 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64595 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64913 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64914 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64915 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64916 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64919 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64920 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64921 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64922 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64923 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64924 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64925 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64976 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA64977 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA64978 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA65004 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA65005 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA65154 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA65235 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA65237 Flavonoid UFGT high pass
rhynchospora_pubera_mRNA65720 Flavonoid UFGT medium pass
rhynchospora_pubera_mRNA65730 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA66214 Flavonoid UFGT low borderline
rhynchospora_pubera_mRNA66535 Flavonoid UFGT high pass