PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6073
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Gene Pathway Family Confidence Status
rhynchospora_pubera_mRNA19984 Phenylpropanoid C3'H/CYP98A high pass
rhynchospora_pubera_mRNA19986 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA20005 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA20007 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA2010 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA20422 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA20425 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA20426 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA20773 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA21173 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA21175 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA21195 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA21208 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA21310 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA21429 Phenylpropanoid C3'H/CYP98A medium pass
rhynchospora_pubera_mRNA21492 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA21493 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA21910 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA22136 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA22261 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA22279 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA22280 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA22459 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA22602 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA22813 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA23276 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA23359 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA23362 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA23368 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA23430 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA23561 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA23637 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA24034 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24377 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24397 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA24465 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24466 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24467 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24468 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24469 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24470 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24495 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24545 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA24547 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA24569 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA24736 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24738 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA24739 Phenylpropanoid C3'H/CYP98A low borderline
rhynchospora_pubera_mRNA25216 Phenylpropanoid C3'H/CYP98A medium borderline
rhynchospora_pubera_mRNA25217 Phenylpropanoid C3'H/CYP98A medium borderline