PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA72795 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA73316 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA73452 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75061 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75436 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA75500 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76010 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76024 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76025 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76027 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76028 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76447 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA76622 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA77469 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA78527 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA78969 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA80291 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA82389 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA82796 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA83968 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA83988 Alkaloid T16H low borderline
rhynchospora_pubera_mRNA85078 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA85468 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86312 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86486 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86906 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86907 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86908 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86909 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA86924 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA87413 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA87474 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA87475 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA87847 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA89806 Alkaloid T16H medium borderline
rhynchospora_pubera_mRNA11989 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA12491 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA12805 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA13107 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA13748 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA14046 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA14250 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA14646 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA14809 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA14810 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA14856 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA14863 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA15252 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA1559 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA15828 Alkaloid T3O medium pass