PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA30640 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA30916 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31160 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31226 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31269 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA31534 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31933 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA31989 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32186 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32509 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA32513 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32651 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32660 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA32663 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32752 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32755 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32756 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32764 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32765 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32767 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA32839 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA32875 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33048 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33302 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA33422 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA33927 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34009 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34429 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34431 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34432 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34485 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA34498 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA34652 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA34861 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA35067 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA35069 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA35416 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA35417 Alkaloid T3O high pass
rhynchospora_pubera_mRNA35423 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA35542 Alkaloid T3O low borderline
rhynchospora_pubera_mRNA35657 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA35658 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA36595 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA37428 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA37516 Alkaloid T3O medium pass
rhynchospora_pubera_mRNA37672 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA37673 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA37676 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA38179 Alkaloid T3O medium borderline
rhynchospora_pubera_mRNA38195 Alkaloid T3O medium borderline