PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
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Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA38837 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38839 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38840 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38841 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38843 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38891 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38892 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA38893 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA38916 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA39139 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA39140 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA39528 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA39530 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA39631 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40112 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40443 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA40444 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40445 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA40448 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40449 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40450 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA40451 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA40459 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA40473 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA40474 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA40699 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA41035 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA41036 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA41037 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA41175 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA41221 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA41446 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA4145 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA42268 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA42461 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA43506 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA43862 Alkaloid 7DLGT high pass
rhynchospora_pubera_mRNA43921 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA43922 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44060 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44061 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44062 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44063 Alkaloid 7DLGT medium pass
rhynchospora_pubera_mRNA44064 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44095 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44096 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44116 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44197 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44748 Alkaloid 7DLGT low borderline
rhynchospora_pubera_mRNA44749 Alkaloid 7DLGT low borderline