PlantSME Plant secondary metabolism enzyme database

Rhynchospora pubera (rhynchospora_pubera)

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Imported from atlas release summary for Rhynchospora pubera.

6517
Candidate Protein Records
6073
Pathway-Level Records
13968
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1564 19 UGT (637) View species results
Alkaloid pathway 1412 23 7DLGT (272) View species results
Phenylpropanoid pathway 1386 11 POD (610) View species results
Flavonoid pathway 944 13 UFGT (575) View species results
Rosmarinic acid pathway 481 7 C4H (216) View species results
Steroid pathway 286 13 SMT1/SMT2/SMT3 (113) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5282 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1021 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
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Protein/Isoform Record Pathway Family Confidence Status
rhynchospora_pubera_mRNA72855 Steroid CAS medium pass
rhynchospora_pubera_mRNA73810 Steroid CAS medium pass
rhynchospora_pubera_mRNA73834 Steroid CAS low borderline
rhynchospora_pubera_mRNA74268 Steroid CAS medium pass
rhynchospora_pubera_mRNA74786 Steroid CAS medium pass
rhynchospora_pubera_mRNA74972 Steroid CAS medium pass
rhynchospora_pubera_mRNA74973 Steroid CAS medium pass
rhynchospora_pubera_mRNA74974 Steroid CAS medium pass
rhynchospora_pubera_mRNA75012 Steroid CAS medium pass
rhynchospora_pubera_mRNA75013 Steroid CAS medium pass
rhynchospora_pubera_mRNA77537 Steroid CAS medium pass
rhynchospora_pubera_mRNA78441 Steroid CAS medium pass
rhynchospora_pubera_mRNA79237 Steroid CAS low borderline
rhynchospora_pubera_mRNA79346 Steroid CAS medium pass
rhynchospora_pubera_mRNA81560 Steroid CAS medium pass
rhynchospora_pubera_mRNA83146 Steroid CAS medium pass
rhynchospora_pubera_mRNA83645 Steroid CAS medium pass
rhynchospora_pubera_mRNA85401 Steroid CAS medium pass
rhynchospora_pubera_mRNA87559 Steroid CAS low borderline
rhynchospora_pubera_mRNA87891 Steroid CAS medium pass
rhynchospora_pubera_mRNA87927 Steroid CAS medium pass
rhynchospora_pubera_mRNA87928 Steroid CAS medium pass
rhynchospora_pubera_mRNA87929 Steroid CAS medium pass
rhynchospora_pubera_mRNA88106 Steroid CAS low borderline
rhynchospora_pubera_mRNA89287 Steroid CAS low borderline
rhynchospora_pubera_mRNA89311 Steroid CAS medium pass
rhynchospora_pubera_mRNA90003 Steroid CAS low borderline
rhynchospora_pubera_mRNA90267 Steroid CAS medium pass
rhynchospora_pubera_mRNA90268 Steroid CAS medium pass
rhynchospora_pubera_mRNA90269 Steroid CAS low borderline
rhynchospora_pubera_mRNA90270 Steroid CAS medium pass
rhynchospora_pubera_mRNA90271 Steroid CAS medium pass
rhynchospora_pubera_mRNA90273 Steroid CAS medium pass
rhynchospora_pubera_mRNA90274 Steroid CAS medium pass
rhynchospora_pubera_mRNA90890 Steroid CAS medium pass
rhynchospora_pubera_mRNA15569 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA15827 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA16430 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA16431 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA19725 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA24034 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA25990 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA31408 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA35053 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA35055 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA35659 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA35915 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA36216 Steroid CPD/CYP90A1 medium borderline
rhynchospora_pubera_mRNA38458 Steroid CPD/CYP90A1 low borderline
rhynchospora_pubera_mRNA46256 Steroid CPD/CYP90A1 low borderline