PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Csimscaffold23280215740 Alkaloid 7DLGT low borderline
Csimscaffold23280215750 Alkaloid 7DLGT medium pass
Csimscaffold23370216590 Alkaloid 7DLGT low borderline
Csimscaffold2400223880 Alkaloid 7DLGT low borderline
Csimscaffold2400223890 Alkaloid 7DLGT medium pass
Csimscaffold24550229130 Alkaloid 7DLGT medium pass
Csimscaffold24550229150 Alkaloid 7DLGT low borderline
Csimscaffold2530235510 Alkaloid 7DLGT high pass
Csimscaffold2590240990 Alkaloid 7DLGT low borderline
Csimscaffold26600247970 Alkaloid 7DLGT medium pass
Csimscaffold26600247990 Alkaloid 7DLGT medium pass
Csimscaffold2740255600 Alkaloid 7DLGT medium pass
Csimscaffold28080261720 Alkaloid 7DLGT low borderline
Csimscaffold28210262840 Alkaloid 7DLGT low borderline
Csimscaffold2840263900 Alkaloid 7DLGT medium pass
Csimscaffold2840263910 Alkaloid 7DLGT medium pass
Csimscaffold2840263920 Alkaloid 7DLGT medium pass
Csimscaffold2840263950 Alkaloid 7DLGT high pass
Csimscaffold2840263970 Alkaloid 7DLGT medium pass
Csimscaffold29670273280 Alkaloid 7DLGT low borderline
Csimscaffold29670273290 Alkaloid 7DLGT low borderline
Csimscaffold3000277320 Alkaloid 7DLGT medium pass
Csimscaffold30260279120 Alkaloid 7DLGT low borderline
Csimscaffold30260279140 Alkaloid 7DLGT low borderline
Csimscaffold31360286490 Alkaloid 7DLGT medium pass
Csimscaffold33330298920 Alkaloid 7DLGT low borderline
Csimscaffold33710301240 Alkaloid 7DLGT medium pass
Csimscaffold33820301860 Alkaloid 7DLGT low borderline
Csimscaffold3470306440 Alkaloid 7DLGT medium pass
Csimscaffold34870307220 Alkaloid 7DLGT medium pass
Csimscaffold34870307230 Alkaloid 7DLGT medium pass
Csimscaffold34990307790 Alkaloid 7DLGT low borderline
Csimscaffold35020309060 Alkaloid 7DLGT high pass
Csimscaffold3540310720 Alkaloid 7DLGT low borderline
Csimscaffold36370315810 Alkaloid 7DLGT low borderline
Csimscaffold3670317330 Alkaloid 7DLGT low borderline
Csimscaffold38220324740 Alkaloid 7DLGT low borderline
Csimscaffold3950330990 Alkaloid 7DLGT low borderline
Csimscaffold40333760 Alkaloid 7DLGT medium pass
Csimscaffold40333770 Alkaloid 7DLGT high pass
Csimscaffold40333790 Alkaloid 7DLGT high pass
Csimscaffold40333800 Alkaloid 7DLGT medium pass
Csimscaffold40333810 Alkaloid 7DLGT medium pass
Csimscaffold40333840 Alkaloid 7DLGT medium pass
Csimscaffold4210344960 Alkaloid 7DLGT low borderline
Csimscaffold4270347110 Alkaloid 7DLGT low borderline
Csimscaffold42850347520 Alkaloid 7DLGT medium pass
Csimscaffold430348500 Alkaloid 7DLGT low borderline
Csimscaffold430348520 Alkaloid 7DLGT low borderline
Csimscaffold4330349900 Alkaloid 7DLGT medium pass