PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
Csimscaffold4330349910 Alkaloid 7DLGT low borderline
Csimscaffold4330349940 Alkaloid 7DLGT medium pass
Csimscaffold4330349950 Alkaloid 7DLGT medium pass
Csimscaffold440353260 Alkaloid 7DLGT medium pass
Csimscaffold4440355030 Alkaloid 7DLGT low borderline
Csimscaffold4530358420 Alkaloid 7DLGT medium pass
Csimscaffold4530358440 Alkaloid 7DLGT medium pass
Csimscaffold4530358460 Alkaloid 7DLGT medium pass
Csimscaffold4530358480 Alkaloid 7DLGT high pass
Csimscaffold4600361390 Alkaloid 7DLGT medium pass
Csimscaffold4600361400 Alkaloid 7DLGT medium pass
Csimscaffold4700364510 Alkaloid 7DLGT medium pass
Csimscaffold4700364530 Alkaloid 7DLGT low borderline
Csimscaffold4700364560 Alkaloid 7DLGT low borderline
Csimscaffold480367680 Alkaloid 7DLGT low borderline
Csimscaffold480367690 Alkaloid 7DLGT low borderline
Csimscaffold4890370570 Alkaloid 7DLGT medium pass
Csimscaffold4910371630 Alkaloid 7DLGT low borderline
Csimscaffold4910371650 Alkaloid 7DLGT medium pass
Csimscaffold4910371670 Alkaloid 7DLGT low borderline
Csimscaffold4910371690 Alkaloid 7DLGT medium pass
Csimscaffold4930372220 Alkaloid 7DLGT low borderline
Csimscaffold4940372430 Alkaloid 7DLGT medium pass
Csimscaffold4950372640 Alkaloid 7DLGT medium pass
Csimscaffold5080377640 Alkaloid 7DLGT medium pass
Csimscaffold5080377650 Alkaloid 7DLGT medium pass
Csimscaffold5080377660 Alkaloid 7DLGT medium pass
Csimscaffold540388390 Alkaloid 7DLGT low borderline
Csimscaffold540388420 Alkaloid 7DLGT low borderline
Csimscaffold540388450 Alkaloid 7DLGT low borderline
Csimscaffold540388460 Alkaloid 7DLGT low borderline
Csimscaffold5580393430 Alkaloid 7DLGT low borderline
Csimscaffold5690396220 Alkaloid 7DLGT high pass
Csimscaffold6280413910 Alkaloid 7DLGT medium pass
Csimscaffold630414700 Alkaloid 7DLGT medium pass
Csimscaffold630414730 Alkaloid 7DLGT low borderline
Csimscaffold630414740 Alkaloid 7DLGT low borderline
Csimscaffold630414760 Alkaloid 7DLGT low borderline
Csimscaffold630414770 Alkaloid 7DLGT low borderline
Csimscaffold630414790 Alkaloid 7DLGT high pass
Csimscaffold6480419370 Alkaloid 7DLGT medium pass
Csimscaffold6480419380 Alkaloid 7DLGT medium pass
Csimscaffold6530421120 Alkaloid 7DLGT medium pass
Csimscaffold6530421130 Alkaloid 7DLGT medium pass
Csimscaffold6530421140 Alkaloid 7DLGT medium pass
Csimscaffold660422920 Alkaloid 7DLGT high pass
Csimscaffold670425600 Alkaloid 7DLGT medium pass
Csimscaffold6780428260 Alkaloid 7DLGT low borderline
Csimscaffold690432120 Alkaloid 7DLGT medium pass
Csimscaffold690432140 Alkaloid 7DLGT low borderline