PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Csimscaffold2630245280 Flavonoid F3H medium borderline
Csimscaffold270251060 Flavonoid F3H medium borderline
Csimscaffold27920259600 Flavonoid F3H medium borderline
Csimscaffold2920270230 Flavonoid F3H low borderline
Csimscaffold2990275220 Flavonoid F3H low borderline
Csimscaffold31140285210 Flavonoid F3H medium pass
Csimscaffold3190289640 Flavonoid F3H low borderline
Csimscaffold32250292210 Flavonoid F3H medium borderline
Csimscaffold32250292220 Flavonoid F3H medium borderline
Csimscaffold3350299790 Flavonoid F3H medium borderline
Csimscaffold3550311500 Flavonoid F3H medium pass
Csimscaffold3550311510 Flavonoid F3H medium borderline
Csimscaffold3550311520 Flavonoid F3H medium pass
Csimscaffold3550311530 Flavonoid F3H low borderline
Csimscaffold3550311540 Flavonoid F3H medium borderline
Csimscaffold3550311550 Flavonoid F3H medium borderline
Csimscaffold36730317530 Flavonoid F3H medium pass
Csimscaffold37330320540 Flavonoid F3H medium borderline
Csimscaffold37680321780 Flavonoid F3H medium borderline
Csimscaffold40850338490 Flavonoid F3H medium borderline
Csimscaffold41000340090 Flavonoid F3H medium borderline
Csimscaffold4150342130 Flavonoid F3H low borderline
Csimscaffold430348250 Flavonoid F3H medium borderline
Csimscaffold4340350220 Flavonoid F3H medium borderline
Csimscaffold43500350820 Flavonoid F3H medium borderline
Csimscaffold4430354760 Flavonoid F3H low borderline
Csimscaffold4570359810 Flavonoid F3H low borderline
Csimscaffold460360890 Flavonoid F3H medium borderline
Csimscaffold460360900 Flavonoid F3H medium borderline
Csimscaffold470364050 Flavonoid F3H low borderline
Csimscaffold470364060 Flavonoid F3H low borderline
Csimscaffold470364280 Flavonoid F3H medium borderline
Csimscaffold4790367190 Flavonoid F3H medium borderline
Csimscaffold4960373150 Flavonoid F3H medium borderline
Csimscaffold4970373520 Flavonoid F3H medium borderline
Csimscaffold4970373640 Flavonoid F3H medium borderline
Csimscaffold500375150 Flavonoid F3H medium borderline
Csimscaffold500375170 Flavonoid F3H medium borderline
Csimscaffold50374490 Flavonoid F3H low borderline
Csimscaffold5050376890 Flavonoid F3H low borderline
Csimscaffold5060377030 Flavonoid F3H low borderline
Csimscaffold5120379730 Flavonoid F3H medium borderline
Csimscaffold5240383060 Flavonoid F3H medium borderline
Csimscaffold5300385350 Flavonoid F3H medium borderline
Csimscaffold5540392390 Flavonoid F3H medium pass
Csimscaffold5630394850 Flavonoid F3H medium borderline
Csimscaffold5740398060 Flavonoid F3H medium borderline
Csimscaffold5950404420 Flavonoid F3H medium borderline
Csimscaffold6320415450 Flavonoid F3H medium borderline
Csimscaffold6480419280 Flavonoid F3H medium borderline