Calamus simplicifolius (calamus_simplicifolius)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 26.99% Alkaloid pathway 22.37% Phenylpropanoid pathway 22.26% Flavonoid pathway 13.67% Rosmarinic acid pathway 8.47% Steroid pathway 6.24%

Family Distribution

2597 Candidate Genes

C4H 6.64% BAHD 6.15% C3'H/CYP98A 4.93% UGT 4.83% 4CL 4.37% 7DLGT 3.92% POD 3.79% UFGT 3.7%

Other Families 61.67%

More Families (97)

CYP76 218 3.65% IFS 217 3.64% T3O 188 3.15% DWF4/CYP90B1 154 2.58% NMT 130 2.18% F3H 123 2.06% CAD 118 1.98% F3'H/CYP75B 99 1.66% BR6OX2/CYP85A2 88 1.47% SMT1/SMT2/SMT3 87 1.46% CYP71 86 1.44% COMT 80 1.34% CAS 76 1.27% PYKS 74 1.24% LAC 72 1.21% STR 69 1.16% CODM/T6ODM 68 1.14% TRI/TRII 66 1.11% GS 63 1.06% HCT 62 1.04% H6H 58 0.97% T16H 58 0.97% G8O/G8H 57 0.96% PMT 56 0.94% CSE 55 0.92% GES 54 0.9% RAS 54 0.9% TPS 54 0.9% 16OMT 50 0.84% CCR 50 0.84% CHS 45 0.75% F5H/CYP84A 45 0.75% IFR 42 0.7% SGD 40 0.67% FNS 40 0.67% ANR 40 0.67% PAL 39 0.65% CYP90D1 38 0.64% DFR 37 0.62% SLS 35 0.59% IO 33 0.55% F3'5'H/CYP75A 33 0.55% 8HGO 30 0.5% BBE 26 0.44% COR 25 0.42% BR6OX1/CYP85A1 24 0.4% NCS 23 0.39% CCoAOMT 23 0.39% CYP51G1 23 0.39% ADC 22 0.37% CPD/CYP90A1 20 0.34% TYDC_DDC 16 0.27% ROT3/CYP90C1 16 0.27% 7DLH 15 0.25% SQS/FDFT1 14 0.23% CYP80B1 13 0.22% LAMT 13 0.22% TAT 13 0.22% 6OMT_4OMT_SOMT 12 0.2% CYP719 12 0.2% MPO 12 0.2% HPPR 11 0.18% FPPS 11 0.18% DWF1 10 0.17% ANS/LDOX 9 0.15% CHI 8 0.13% XMT_MXMT_DXMT 7 0.12% CNMT 7 0.12% ISY 7 0.12% CPR 7 0.12% DWF7 7 0.12% AACT 7 0.12% SMO1/SMO2 6 0.1% GGPPS 6 0.1% CMK/IspE 5 0.08% MVK 5 0.08% DXS 5 0.08% ODC 4 0.07% FLS 4 0.07% FK 4 0.07% HYD1 4 0.07% DET2 4 0.07% SQE 4 0.07% HDS/IspG 4 0.07% TDC 3 0.05% CPI1 3 0.05% DWF5 3 0.05% IDI 3 0.05% MVD 3 0.05% HMGS 3 0.05% MDS/IspF 3 0.05% HMGR 3 0.05% MCT/IspD 2 0.03% PMK 2 0.03% CYP80F1 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	701	20	UGT (261)	View species results
Alkaloid pathway	581	23	7DLGT (118)	View species results
Phenylpropanoid pathway	578	13	POD (193)	View species results
Flavonoid pathway	355	12	UFGT (195)	View species results
Rosmarinic acid pathway	220	7	C4H (97)	View species results
Steroid pathway	162	12	CAS (69)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	2163	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	483	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Csimscaffold25770239800	Alkaloid	NMT	medium	borderline	NMT__00043__sp_Q8H0D2_DXMT1_COFAR
Csimscaffold28270263080	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Csimscaffold28390263830	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold28390263850	Alkaloid	NMT	medium	borderline	NMT__00001__sp_A0A075D654_ANMT_RAUSE
Csimscaffold29230270500	Alkaloid	NMT	medium	pass	NMT__00017__sp_F4K1J4_ATXR7_ARATH
Csimscaffold3010278130	Alkaloid	NMT	low	borderline	NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Csimscaffold3050280420	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold3050280480	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold30590281000	Alkaloid	NMT	medium	pass	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold30590281020	Alkaloid	NMT	low	borderline	NMT__00027__sp_Q10MI4_EZ1_ORYSJ
Csimscaffold3060281260	Alkaloid	NMT	medium	pass	NMT__00021__sp_O64827_SUVR5_ARATH
Csimscaffold3130285980	Alkaloid	NMT	medium	pass	NMT__00036__sp_Q6K9X3_NAMT1_ORYSJ
Csimscaffold31530287430	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold3160287910	Alkaloid	NMT	low	borderline	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Csimscaffold3200290680	Alkaloid	NMT	medium	borderline	NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Csimscaffold32320292760	Alkaloid	NMT	low	borderline	NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
Csimscaffold32380293010	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold33440299510	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold3360300530	Alkaloid	NMT	low	borderline	NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Csimscaffold340302840	Alkaloid	NMT	medium	pass	NMT__00019__sp_O22781_SUVH2_ARATH
Csimscaffold3540310800	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold3620315170	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Csimscaffold3650316530	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Csimscaffold3670317350	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Csimscaffold3670317360	Alkaloid	NMT	medium	pass	NMT__00032__sp_Q5PP37_ATXR2_ARATH
Csimscaffold370318560	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Csimscaffold3890327670	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold390328510	Alkaloid	NMT	medium	pass	NMT__00066__sp_Q9SU94_ANM11_ARATH
Csimscaffold3910329260	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Csimscaffold39380330350	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold39380330360	Alkaloid	NMT	medium	pass	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold3960331460	Alkaloid	NMT	medium	pass	NMT__00054__sp_Q9FF80_SUVH1_ARATH
Csimscaffold400334540	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Csimscaffold4020335540	Alkaloid	NMT	medium	pass	NMT__00020__sp_O23372_ATXR3_ARATH
Csimscaffold4150341930	Alkaloid	NMT	low	borderline	NMT__00055__sp_Q9FNC7_SUVR2_ARATH
Csimscaffold4150341940	Alkaloid	NMT	medium	pass	NMT__00048__sp_Q8W595_SUVR4_ARATH
Csimscaffold41700342850	Alkaloid	NMT	medium	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold4170342820	Alkaloid	NMT	medium	pass	NMT__00061__sp_Q9SAH5_PLMT_ARATH
Csimscaffold4220345220	Alkaloid	NMT	low	borderline	NMT__00002__sp_A0A075D6M1_NNMT_RAUSE
Csimscaffold43550350860	Alkaloid	NMT	medium	pass	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold460360810	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold4850369510	Alkaloid	NMT	medium	pass	NMT__00008__sp_A0AA51VIL5_NMT2_LOPWI
Csimscaffold49160371830	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold4930372310	Alkaloid	NMT	medium	pass	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold5110379390	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Csimscaffold5490391070	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Csimscaffold5660395550	Alkaloid	NMT	low	borderline	NMT__00024__sp_P0CB22_ATX2_ARATH
Csimscaffold5740398490	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Csimscaffold5760398870	Alkaloid	NMT	medium	borderline	NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
Csimscaffold5800400060	Alkaloid	NMT	medium	pass	NMT__00067__sp_Q9T0G7_SUVH9_ARATH