Calamus simplicifolius (calamus_simplicifolius)
Imported from atlas release summary for Calamus simplicifolius.
2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2597
Candidate Genes
C4H
6.64%
BAHD
6.15%
C3'H/CYP98A
4.93%
UGT
4.83%
4CL
4.37%
7DLGT
3.92%
POD
3.79%
UFGT
3.7%
Other Families
61.67%
More Families (97)
CYP76
218
3.65%
IFS
217
3.64%
T3O
188
3.15%
DWF4/CYP90B1
154
2.58%
NMT
130
2.18%
F3H
123
2.06%
CAD
118
1.98%
F3'H/CYP75B
99
1.66%
BR6OX2/CYP85A2
88
1.47%
SMT1/SMT2/SMT3
87
1.46%
CYP71
86
1.44%
COMT
80
1.34%
CAS
76
1.27%
PYKS
74
1.24%
LAC
72
1.21%
STR
69
1.16%
CODM/T6ODM
68
1.14%
TRI/TRII
66
1.11%
GS
63
1.06%
HCT
62
1.04%
H6H
58
0.97%
T16H
58
0.97%
G8O/G8H
57
0.96%
PMT
56
0.94%
CSE
55
0.92%
GES
54
0.9%
RAS
54
0.9%
TPS
54
0.9%
16OMT
50
0.84%
CCR
50
0.84%
CHS
45
0.75%
F5H/CYP84A
45
0.75%
IFR
42
0.7%
SGD
40
0.67%
FNS
40
0.67%
ANR
40
0.67%
PAL
39
0.65%
CYP90D1
38
0.64%
DFR
37
0.62%
SLS
35
0.59%
IO
33
0.55%
F3'5'H/CYP75A
33
0.55%
8HGO
30
0.5%
BBE
26
0.44%
COR
25
0.42%
BR6OX1/CYP85A1
24
0.4%
NCS
23
0.39%
CCoAOMT
23
0.39%
CYP51G1
23
0.39%
ADC
22
0.37%
CPD/CYP90A1
20
0.34%
TYDC_DDC
16
0.27%
ROT3/CYP90C1
16
0.27%
7DLH
15
0.25%
SQS/FDFT1
14
0.23%
CYP80B1
13
0.22%
LAMT
13
0.22%
TAT
13
0.22%
6OMT_4OMT_SOMT
12
0.2%
CYP719
12
0.2%
MPO
12
0.2%
HPPR
11
0.18%
FPPS
11
0.18%
DWF1
10
0.17%
ANS/LDOX
9
0.15%
CHI
8
0.13%
XMT_MXMT_DXMT
7
0.12%
CNMT
7
0.12%
ISY
7
0.12%
CPR
7
0.12%
DWF7
7
0.12%
AACT
7
0.12%
SMO1/SMO2
6
0.1%
GGPPS
6
0.1%
CMK/IspE
5
0.08%
MVK
5
0.08%
DXS
5
0.08%
ODC
4
0.07%
FLS
4
0.07%
FK
4
0.07%
HYD1
4
0.07%
DET2
4
0.07%
SQE
4
0.07%
HDS/IspG
4
0.07%
TDC
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
HMGS
3
0.05%
MDS/IspF
3
0.05%
HMGR
3
0.05%
MCT/IspD
2
0.03%
PMK
2
0.03%
CYP80F1
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 701 | 20 | UGT (261) | View species results |
| Alkaloid pathway | 581 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 578 | 13 | POD (193) | View species results |
| Flavonoid pathway | 355 | 12 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 220 | 7 | C4H (97) | View species results |
| Steroid pathway | 162 | 12 | CAS (69) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2163 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 483 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Csimscaffold2130194640 | Terpenoid | UGT | low | borderline | UGT__00034__sp_F8WLS6_UGT6_CATRO |
| Csimscaffold21750198860 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csimscaffold21750198890 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csimscaffold21750198900 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csimscaffold21780199090 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| Csimscaffold21790199160 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csimscaffold21980200840 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold21980200880 | Terpenoid | UGT | low | borderline | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold22100203040 | Terpenoid | UGT | medium | pass | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| Csimscaffold22100203050 | Terpenoid | UGT | medium | pass | UGT__00021__sp_A7MAS5_75L17_MALDO |
| Csimscaffold22100203080 | Terpenoid | UGT | medium | pass | UGT__00100__sp_Q9LVF0_U84A2_ARATH |
| Csimscaffold22140203200 | Terpenoid | UGT | medium | pass | UGT__00025__sp_C3W7B0_CGT_ORYSI |
| Csimscaffold22140203230 | Terpenoid | UGT | medium | pass | UGT__00025__sp_C3W7B0_CGT_ORYSI |
| Csimscaffold2260207800 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Csimscaffold2260207820 | Terpenoid | UGT | medium | pass | UGT__00109__sp_Q9ZQ94_U73C5_ARATH |
| Csimscaffold22860210350 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csimscaffold2320214830 | Terpenoid | UGT | medium | pass | UGT__00054__sp_O23406_U75D1_ARATH |
| Csimscaffold2320214840 | Terpenoid | UGT | medium | pass | UGT__00068__sp_P0DO75_GT752_SIRGR |
| Csimscaffold2320214850 | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| Csimscaffold23280215730 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Csimscaffold23280215740 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Csimscaffold23280215750 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Csimscaffold23370216590 | Terpenoid | UGT | low | borderline | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| Csimscaffold2400223880 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Csimscaffold2400223890 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| Csimscaffold24550229120 | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Csimscaffold24550229130 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| Csimscaffold24550229150 | Terpenoid | UGT | medium | pass | UGT__00074__sp_Q7XT97_UGT79_ORYSJ |
| Csimscaffold24710230660 | Terpenoid | UGT | medium | pass | UGT__00110__sp_Q9ZQ95_U73C6_ARATH |
| Csimscaffold2530235510 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csimscaffold26600247970 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| Csimscaffold26600247980 | Terpenoid | UGT | medium | pass | UGT__00080__sp_Q94AB5_U7E12_ARATH |
| Csimscaffold26600247990 | Terpenoid | UGT | low | borderline | UGT__00088__sp_Q9LK73_U88A1_ARATH |
| Csimscaffold2740255600 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| Csimscaffold28000261420 | Terpenoid | UGT | low | borderline | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csimscaffold28080261720 | Terpenoid | UGT | medium | pass | UGT__00030__sp_D3UAG3_U88F2_PYRCO |
| Csimscaffold28210262840 | Terpenoid | UGT | medium | pass | UGT__00100__sp_Q9LVF0_U84A2_ARATH |
| Csimscaffold2840263900 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold2840263910 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold2840263920 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold2840263950 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold2840263970 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| Csimscaffold29670273280 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csimscaffold29670273290 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| Csimscaffold3000277320 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| Csimscaffold30260279120 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| Csimscaffold30260279140 | Terpenoid | UGT | medium | pass | UGT__00082__sp_Q9C9B0_U89B1_ARATH |
| Csimscaffold31360286490 | Terpenoid | UGT | medium | pass | UGT__00017__sp_A0A224AKZ9_708G2_CITUN |
| Csimscaffold33330298920 | Terpenoid | UGT | medium | pass | UGT__00031__sp_F8WKW0_UGT1_GARJA |
| Csimscaffold33710301240 | Terpenoid | UGT | medium | pass | UGT__00100__sp_Q9LVF0_U84A2_ARATH |