PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold10610015450 Terpenoid GGPPS medium borderline
Csimscaffold13930085120 Terpenoid GGPPS medium borderline
Csimscaffold19550169660 Terpenoid GGPPS medium borderline
Csimscaffold70435770 Terpenoid GGPPS medium borderline
Csimscaffold7630452850 Terpenoid GGPPS medium borderline
Csimscaffold820467880 Terpenoid GGPPS medium borderline
Csimscaffold2070186480 Terpenoid HDR/IspH high pass
Csimscaffold1410088670 Terpenoid HDS/IspG high pass
Csimscaffold23010213200 Terpenoid HDS/IspG medium pass
Csimscaffold34910307660 Terpenoid HDS/IspG medium pass
Csimscaffold6020407210 Terpenoid HDS/IspG medium pass
Csimscaffold4490356690 Terpenoid HMGR medium pass
Csimscaffold470364470 Terpenoid HMGR medium pass
Csimscaffold6680424910 Terpenoid HMGR medium pass
Csimscaffold1550113090 Terpenoid HMGS high pass
Csimscaffold25570238130 Terpenoid HMGS high pass
Csimscaffold27380255210 Terpenoid HMGS high pass
Csimscaffold11060024680 Terpenoid IDI low borderline
Csimscaffold18220152750 Terpenoid IDI medium pass
Csimscaffold9180492990 Terpenoid IDI medium pass
Csimscaffold1550113290 Terpenoid MCT/IspD low borderline
Csimscaffold26840249890 Terpenoid MCT/IspD high pass
Csimscaffold18620157780 Terpenoid MDS/IspF medium pass
Csimscaffold23470217510 Terpenoid MDS/IspF low borderline
Csimscaffold9740506450 Terpenoid MDS/IspF high pass
Csimscaffold13080067050 Terpenoid MVD low borderline
Csimscaffold15450112510 Terpenoid MVD low borderline
Csimscaffold3080282220 Terpenoid MVD medium pass
Csimscaffold12010047220 Terpenoid MVK low borderline
Csimscaffold15060106270 Terpenoid MVK low borderline
Csimscaffold2110192420 Terpenoid MVK low borderline
Csimscaffold7510449850 Terpenoid MVK medium pass
Csimscaffold9790507580 Terpenoid MVK low borderline
Csimscaffold560394140 Terpenoid PMK low borderline
Csimscaffold8600477830 Terpenoid PMK medium pass
Csimscaffold1030008430 Terpenoid TPS medium pass
Csimscaffold1030008440 Terpenoid TPS medium pass
Csimscaffold1030008480 Terpenoid TPS medium pass
Csimscaffold1030008490 Terpenoid TPS low borderline
Csimscaffold1030008500 Terpenoid TPS medium pass
Csimscaffold1080019180 Terpenoid TPS medium pass
Csimscaffold10950022160 Terpenoid TPS medium pass
Csimscaffold13230070140 Terpenoid TPS medium pass
Csimscaffold13230070150 Terpenoid TPS medium pass
Csimscaffold13650079230 Terpenoid TPS medium pass
Csimscaffold1420090420 Terpenoid TPS medium pass
Csimscaffold15660115630 Terpenoid TPS medium pass
Csimscaffold15860118630 Terpenoid TPS low borderline
Csimscaffold16480127900 Terpenoid TPS medium pass
Csimscaffold17000136180 Terpenoid TPS medium pass