PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold1090021150 Alkaloid IO medium borderline
Csimscaffold11150026560 Alkaloid IO medium borderline
Csimscaffold120046280 Alkaloid IO medium borderline
Csimscaffold13540076330 Alkaloid IO medium borderline
Csimscaffold15300110390 Alkaloid IO medium borderline
Csimscaffold16320126140 Alkaloid IO medium borderline
Csimscaffold1720138500 Alkaloid IO low borderline
Csimscaffold18250153170 Alkaloid IO medium pass
Csimscaffold21130192860 Alkaloid IO medium borderline
Csimscaffold22030202370 Alkaloid IO medium borderline
Csimscaffold22030202380 Alkaloid IO medium borderline
Csimscaffold22870210390 Alkaloid IO medium borderline
Csimscaffold24910232060 Alkaloid IO low borderline
Csimscaffold2760257200 Alkaloid IO medium borderline
Csimscaffold27730258350 Alkaloid IO low borderline
Csimscaffold290267970 Alkaloid IO medium borderline
Csimscaffold3850325870 Alkaloid IO low borderline
Csimscaffold3910329280 Alkaloid IO medium borderline
Csimscaffold40100335400 Alkaloid IO low borderline
Csimscaffold40333550 Alkaloid IO low borderline
Csimscaffold4420354400 Alkaloid IO medium borderline
Csimscaffold520381410 Alkaloid IO medium borderline
Csimscaffold520381420 Alkaloid IO medium borderline
Csimscaffold5360386820 Alkaloid IO medium borderline
Csimscaffold610409190 Alkaloid IO medium borderline
Csimscaffold6230412700 Alkaloid IO medium borderline
Csimscaffold8100465710 Alkaloid IO medium borderline
Csimscaffold8200468200 Alkaloid IO medium borderline
Csimscaffold9520501230 Alkaloid IO low borderline
Csimscaffold9570502360 Alkaloid IO medium borderline
Csimscaffold1900163240 Alkaloid ISY low borderline
Csimscaffold21420195850 Alkaloid ISY medium pass
Csimscaffold5540392400 Alkaloid ISY medium pass
Csimscaffold660422670 Alkaloid ISY medium pass
Csimscaffold660422680 Alkaloid ISY medium pass
Csimscaffold8260469300 Alkaloid ISY medium pass
Csimscaffold8570476770 Alkaloid ISY medium pass
Csimscaffold11410032410 Alkaloid LAMT medium borderline
Csimscaffold11510034480 Alkaloid LAMT medium borderline
Csimscaffold16090122420 Alkaloid LAMT low borderline
Csimscaffold1960170090 Alkaloid LAMT medium borderline
Csimscaffold2690250220 Alkaloid LAMT medium borderline
Csimscaffold27470256300 Alkaloid LAMT medium borderline
Csimscaffold27470256310 Alkaloid LAMT medium borderline
Csimscaffold28130262260 Alkaloid LAMT medium borderline
Csimscaffold3760321460 Alkaloid LAMT low borderline
Csimscaffold6460418910 Alkaloid LAMT medium borderline
Csimscaffold7190440920 Alkaloid LAMT medium borderline
Csimscaffold7680453910 Alkaloid LAMT low borderline
Csimscaffold890484430 Alkaloid LAMT medium borderline