PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Csimscaffold10970022520 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold15330110700 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold23630219300 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold26760249160 Alkaloid 6OMT_4OMT_SOMT medium borderline
Csimscaffold2900268530 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold330296630 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold330296650 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold5980405180 Alkaloid 6OMT_4OMT_SOMT low borderline
Csimscaffold5980405260 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold5980405270 Alkaloid 6OMT_4OMT_SOMT medium borderline
Csimscaffold5980405310 Alkaloid 6OMT_4OMT_SOMT medium borderline
Csimscaffold6470419250 Alkaloid 6OMT_4OMT_SOMT medium pass
Csimscaffold10000740 Alkaloid 7DLGT medium pass
Csimscaffold10000980 Alkaloid 7DLGT low borderline
Csimscaffold10001010 Alkaloid 7DLGT low borderline
Csimscaffold10001040 Alkaloid 7DLGT low borderline
Csimscaffold10001050 Alkaloid 7DLGT low borderline
Csimscaffold10001080 Alkaloid 7DLGT low borderline
Csimscaffold10360009860 Alkaloid 7DLGT low borderline
Csimscaffold10410011420 Alkaloid 7DLGT low borderline
Csimscaffold10410011430 Alkaloid 7DLGT medium pass
Csimscaffold10410011440 Alkaloid 7DLGT low borderline
Csimscaffold10620015750 Alkaloid 7DLGT low borderline
Csimscaffold10790018720 Alkaloid 7DLGT low borderline
Csimscaffold10870020340 Alkaloid 7DLGT high pass
Csimscaffold10870020350 Alkaloid 7DLGT medium pass
Csimscaffold10870020570 Alkaloid 7DLGT medium pass
Csimscaffold11060024840 Alkaloid 7DLGT medium pass
Csimscaffold11100025950 Alkaloid 7DLGT medium pass
Csimscaffold1120027400 Alkaloid 7DLGT low borderline
Csimscaffold1120027430 Alkaloid 7DLGT low borderline
Csimscaffold1120027450 Alkaloid 7DLGT medium pass
Csimscaffold11350030980 Alkaloid 7DLGT low borderline
Csimscaffold11540035060 Alkaloid 7DLGT low borderline
Csimscaffold11620036850 Alkaloid 7DLGT low borderline
Csimscaffold11620036950 Alkaloid 7DLGT low borderline
Csimscaffold1170038690 Alkaloid 7DLGT low borderline
Csimscaffold1170038700 Alkaloid 7DLGT low borderline
Csimscaffold11750040460 Alkaloid 7DLGT high pass
Csimscaffold12230051260 Alkaloid 7DLGT low borderline
Csimscaffold12430054640 Alkaloid 7DLGT low borderline
Csimscaffold12650058500 Alkaloid 7DLGT low borderline
Csimscaffold13060066730 Alkaloid 7DLGT low borderline
Csimscaffold1350075550 Alkaloid 7DLGT medium pass
Csimscaffold1350075560 Alkaloid 7DLGT medium pass
Csimscaffold13750081450 Alkaloid 7DLGT medium pass
Csimscaffold1460097560 Alkaloid 7DLGT low borderline
Csimscaffold1460097580 Alkaloid 7DLGT low borderline
Csimscaffold1460097590 Alkaloid 7DLGT low borderline
Csimscaffold1460097600 Alkaloid 7DLGT low borderline