PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold830470330 Alkaloid NMT low borderline
Csimscaffold830470340 Alkaloid NMT low borderline
Csimscaffold8370471960 Alkaloid NMT low borderline
Csimscaffold8420473100 Alkaloid NMT medium pass
Csimscaffold8450473490 Alkaloid NMT medium borderline
Csimscaffold850475150 Alkaloid NMT medium pass
Csimscaffold880482500 Alkaloid NMT medium pass
Csimscaffold8850483670 Alkaloid NMT medium pass
Csimscaffold9050489670 Alkaloid NMT medium pass
Csimscaffold940497840 Alkaloid NMT low borderline
Csimscaffold9470499750 Alkaloid NMT low borderline
Csimscaffold9650504230 Alkaloid NMT medium borderline
Csimscaffold9800508290 Alkaloid NMT medium pass
Csimscaffold9950511640 Alkaloid NMT medium borderline
Csimscaffold9950511660 Alkaloid NMT medium borderline
Csimscaffold10450011880 Alkaloid ODC medium pass
Csimscaffold21990200910 Alkaloid ODC medium pass
Csimscaffold6370416510 Alkaloid ODC medium pass
Csimscaffold6370416530 Alkaloid ODC medium pass
Csimscaffold11780041030 Alkaloid PMT medium pass
Csimscaffold1180041410 Alkaloid PMT medium pass
Csimscaffold1180041420 Alkaloid PMT medium pass
Csimscaffold1180041440 Alkaloid PMT medium pass
Csimscaffold11930044630 Alkaloid PMT medium borderline
Csimscaffold11930044640 Alkaloid PMT medium borderline
Csimscaffold12110048960 Alkaloid PMT medium pass
Csimscaffold12110049000 Alkaloid PMT medium pass
Csimscaffold12140049460 Alkaloid PMT low borderline
Csimscaffold1310067890 Alkaloid PMT medium pass
Csimscaffold13360072110 Alkaloid PMT medium pass
Csimscaffold13360072120 Alkaloid PMT medium pass
Csimscaffold13770082190 Alkaloid PMT medium borderline
Csimscaffold14000087600 Alkaloid PMT low borderline
Csimscaffold14000087620 Alkaloid PMT medium pass
Csimscaffold14000087630 Alkaloid PMT low borderline
Csimscaffold14110089100 Alkaloid PMT low borderline
Csimscaffold14210090950 Alkaloid PMT low borderline
Csimscaffold14770100340 Alkaloid PMT medium pass
Csimscaffold15130107720 Alkaloid PMT medium pass
Csimscaffold17730145160 Alkaloid PMT medium pass
Csimscaffold17960148130 Alkaloid PMT medium pass
Csimscaffold1830153600 Alkaloid PMT low borderline
Csimscaffold1910164140 Alkaloid PMT medium pass
Csimscaffold2050183370 Alkaloid PMT medium borderline
Csimscaffold21330194940 Alkaloid PMT medium pass
Csimscaffold21470196180 Alkaloid PMT medium pass
Csimscaffold22080202710 Alkaloid PMT low borderline
Csimscaffold2280209870 Alkaloid PMT medium pass
Csimscaffold22930211120 Alkaloid PMT medium pass
Csimscaffold23010213220 Alkaloid PMT low borderline