PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold23010213230 Alkaloid PMT medium pass
Csimscaffold24480228360 Alkaloid PMT medium pass
Csimscaffold2580240040 Alkaloid PMT low borderline
Csimscaffold25950241240 Alkaloid PMT medium pass
Csimscaffold26660248360 Alkaloid PMT medium pass
Csimscaffold26680248450 Alkaloid PMT medium pass
Csimscaffold3270294660 Alkaloid PMT low borderline
Csimscaffold32720294950 Alkaloid PMT medium pass
Csimscaffold32720294960 Alkaloid PMT medium pass
Csimscaffold3310297390 Alkaloid PMT medium pass
Csimscaffold3590312960 Alkaloid PMT medium pass
Csimscaffold36770317560 Alkaloid PMT medium pass
Csimscaffold37880322610 Alkaloid PMT medium pass
Csimscaffold37880322620 Alkaloid PMT medium pass
Csimscaffold4440355190 Alkaloid PMT low borderline
Csimscaffold4560359530 Alkaloid PMT medium pass
Csimscaffold4570359820 Alkaloid PMT medium pass
Csimscaffold5740398310 Alkaloid PMT medium pass
Csimscaffold6160410620 Alkaloid PMT low borderline
Csimscaffold6160410630 Alkaloid PMT medium pass
Csimscaffold6690425210 Alkaloid PMT medium pass
Csimscaffold6690425220 Alkaloid PMT medium pass
Csimscaffold7500449700 Alkaloid PMT low borderline
Csimscaffold9610503530 Alkaloid PMT low borderline
Csimscaffold9700505820 Alkaloid PMT low borderline
Csimscaffold1020006200 Alkaloid PYKS high pass
Csimscaffold1020006240 Alkaloid PYKS high pass
Csimscaffold1020006250 Alkaloid PYKS medium pass
Csimscaffold1020006260 Alkaloid PYKS high pass
Csimscaffold1060015020 Alkaloid PYKS low borderline
Csimscaffold11780041060 Alkaloid PYKS low borderline
Csimscaffold12340053000 Alkaloid PYKS medium pass
Csimscaffold12420054410 Alkaloid PYKS low borderline
Csimscaffold12610057960 Alkaloid PYKS low borderline
Csimscaffold1370080080 Alkaloid PYKS medium pass
Csimscaffold13880084160 Alkaloid PYKS low borderline
Csimscaffold14730099960 Alkaloid PYKS high pass
Csimscaffold14940103330 Alkaloid PYKS low borderline
Csimscaffold150104420 Alkaloid PYKS low borderline
Csimscaffold15050106080 Alkaloid PYKS high pass
Csimscaffold15050106090 Alkaloid PYKS high pass
Csimscaffold15050106120 Alkaloid PYKS high pass
Csimscaffold15720116790 Alkaloid PYKS low borderline
Csimscaffold16540128940 Alkaloid PYKS low borderline
Csimscaffold170135700 Alkaloid PYKS high pass
Csimscaffold1730139980 Alkaloid PYKS low borderline
Csimscaffold17340140530 Alkaloid PYKS low borderline
Csimscaffold1760143920 Alkaloid PYKS low borderline
Csimscaffold17950148090 Alkaloid PYKS low borderline
Csimscaffold18890160840 Alkaloid PYKS high pass