PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold190162960 Alkaloid PYKS medium pass
Csimscaffold1940167700 Alkaloid PYKS high pass
Csimscaffold20950190120 Alkaloid PYKS high pass
Csimscaffold20950190150 Alkaloid PYKS high pass
Csimscaffold21350195080 Alkaloid PYKS medium pass
Csimscaffold2290210690 Alkaloid PYKS high pass
Csimscaffold2290210700 Alkaloid PYKS medium pass
Csimscaffold2290210720 Alkaloid PYKS medium pass
Csimscaffold2290210760 Alkaloid PYKS high pass
Csimscaffold2290210780 Alkaloid PYKS high pass
Csimscaffold2290210810 Alkaloid PYKS high pass
Csimscaffold2290210820 Alkaloid PYKS high pass
Csimscaffold23280215720 Alkaloid PYKS low borderline
Csimscaffold2480231070 Alkaloid PYKS low borderline
Csimscaffold25090233920 Alkaloid PYKS high pass
Csimscaffold2650246890 Alkaloid PYKS high pass
Csimscaffold2730254730 Alkaloid PYKS high pass
Csimscaffold2740255950 Alkaloid PYKS low borderline
Csimscaffold27870258980 Alkaloid PYKS low borderline
Csimscaffold27870259010 Alkaloid PYKS low borderline
Csimscaffold28030261570 Alkaloid PYKS low borderline
Csimscaffold28030261590 Alkaloid PYKS low borderline
Csimscaffold2870265800 Alkaloid PYKS high pass
Csimscaffold2870265820 Alkaloid PYKS high pass
Csimscaffold2870265840 Alkaloid PYKS high pass
Csimscaffold2870265890 Alkaloid PYKS high pass
Csimscaffold31120285150 Alkaloid PYKS low borderline
Csimscaffold35080309150 Alkaloid PYKS high pass
Csimscaffold3860326520 Alkaloid PYKS high pass
Csimscaffold40360336510 Alkaloid PYKS high pass
Csimscaffold4850369770 Alkaloid PYKS high pass
Csimscaffold50350376350 Alkaloid PYKS low borderline
Csimscaffold530384680 Alkaloid PYKS low borderline
Csimscaffold6090408660 Alkaloid PYKS high pass
Csimscaffold6340415850 Alkaloid PYKS low borderline
Csimscaffold6360416000 Alkaloid PYKS low borderline
Csimscaffold6910432710 Alkaloid PYKS low borderline
Csimscaffold710438470 Alkaloid PYKS low borderline
Csimscaffold8550476400 Alkaloid PYKS low borderline
Csimscaffold8550476420 Alkaloid PYKS low borderline
Csimscaffold8880484270 Alkaloid PYKS low borderline
Csimscaffold8930485380 Alkaloid PYKS high pass
Csimscaffold8930485400 Alkaloid PYKS high pass
Csimscaffold8930485420 Alkaloid PYKS high pass
Csimscaffold8930485450 Alkaloid PYKS high pass
Csimscaffold8930485480 Alkaloid PYKS high pass
Csimscaffold8930485510 Alkaloid PYKS high pass
Csimscaffold8930485530 Alkaloid PYKS high pass
Csimscaffold9190493150 Alkaloid PYKS high pass
Csimscaffold11130026380 Alkaloid SGD medium pass