PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2597
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
Csimscaffold10550013880 Rosmarinic Acid C4H medium pass
Csimscaffold10550013890 Rosmarinic Acid C4H medium pass
Csimscaffold10590014590 Rosmarinic Acid C4H low borderline
Csimscaffold10590014610 Rosmarinic Acid C4H low borderline
Csimscaffold10700017470 Rosmarinic Acid C4H low borderline
Csimscaffold1080019030 Rosmarinic Acid C4H medium pass
Csimscaffold1080019040 Rosmarinic Acid C4H low borderline
Csimscaffold10870020280 Rosmarinic Acid C4H medium pass
Csimscaffold1090020920 Rosmarinic Acid C4H low borderline
Csimscaffold1090021150 Rosmarinic Acid C4H medium pass
Csimscaffold10960022200 Rosmarinic Acid C4H low borderline
Csimscaffold110023240 Rosmarinic Acid C4H low borderline
Csimscaffold11110026240 Rosmarinic Acid C4H low borderline
Csimscaffold11150026560 Rosmarinic Acid C4H low borderline
Csimscaffold1150034150 Rosmarinic Acid C4H medium pass
Csimscaffold11540035150 Rosmarinic Acid C4H medium pass
Csimscaffold11690038460 Rosmarinic Acid C4H medium pass
Csimscaffold11690038470 Rosmarinic Acid C4H medium pass
Csimscaffold11700039170 Rosmarinic Acid C4H low borderline
Csimscaffold1180041250 Rosmarinic Acid C4H low borderline
Csimscaffold11940044920 Rosmarinic Acid C4H low borderline
Csimscaffold12000046890 Rosmarinic Acid C4H medium pass
Csimscaffold12000046900 Rosmarinic Acid C4H low borderline
Csimscaffold120046240 Rosmarinic Acid C4H low borderline
Csimscaffold120046260 Rosmarinic Acid C4H low borderline
Csimscaffold120046270 Rosmarinic Acid C4H low borderline
Csimscaffold120046280 Rosmarinic Acid C4H low borderline
Csimscaffold12240051390 Rosmarinic Acid C4H medium pass
Csimscaffold1240054030 Rosmarinic Acid C4H low borderline
Csimscaffold12590057330 Rosmarinic Acid C4H medium pass
Csimscaffold12590057340 Rosmarinic Acid C4H medium pass
Csimscaffold12760060510 Rosmarinic Acid C4H medium pass
Csimscaffold12800061330 Rosmarinic Acid C4H medium pass
Csimscaffold12850062000 Rosmarinic Acid C4H low borderline
Csimscaffold13180068960 Rosmarinic Acid C4H low borderline
Csimscaffold13180068980 Rosmarinic Acid C4H low borderline
Csimscaffold13180069000 Rosmarinic Acid C4H medium pass
Csimscaffold13180069020 Rosmarinic Acid C4H low borderline
Csimscaffold13450074270 Rosmarinic Acid C4H low borderline
Csimscaffold13450074310 Rosmarinic Acid C4H low borderline
Csimscaffold13540076330 Rosmarinic Acid C4H low borderline
Csimscaffold13550076660 Rosmarinic Acid C4H low borderline
Csimscaffold13810083230 Rosmarinic Acid C4H low borderline
Csimscaffold1390084750 Rosmarinic Acid C4H low borderline
Csimscaffold14180090210 Rosmarinic Acid C4H low borderline
Csimscaffold14360093500 Rosmarinic Acid C4H medium pass
Csimscaffold14770100380 Rosmarinic Acid C4H medium pass
Csimscaffold14850101790 Rosmarinic Acid C4H low borderline
Csimscaffold14850101800 Rosmarinic Acid C4H low borderline
Csimscaffold14950103450 Rosmarinic Acid C4H low borderline