Calamus simplicifolius (calamus_simplicifolius)
Imported from atlas release summary for Calamus simplicifolius.
2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5967
Family-Level Calls
C4H
6.64%
BAHD
6.15%
C3'H/CYP98A
4.93%
UGT
4.83%
4CL
4.37%
7DLGT
3.92%
POD
3.79%
UFGT
3.7%
Other Families
61.67%
More Families (97)
CYP76
218
3.65%
IFS
217
3.64%
T3O
188
3.15%
DWF4/CYP90B1
154
2.58%
NMT
130
2.18%
F3H
123
2.06%
CAD
118
1.98%
F3'H/CYP75B
99
1.66%
BR6OX2/CYP85A2
88
1.47%
SMT1/SMT2/SMT3
87
1.46%
CYP71
86
1.44%
COMT
80
1.34%
CAS
76
1.27%
PYKS
74
1.24%
LAC
72
1.21%
STR
69
1.16%
CODM/T6ODM
68
1.14%
TRI/TRII
66
1.11%
GS
63
1.06%
HCT
62
1.04%
H6H
58
0.97%
T16H
58
0.97%
G8O/G8H
57
0.96%
PMT
56
0.94%
CSE
55
0.92%
GES
54
0.9%
RAS
54
0.9%
TPS
54
0.9%
16OMT
50
0.84%
CCR
50
0.84%
CHS
45
0.75%
F5H/CYP84A
45
0.75%
IFR
42
0.7%
SGD
40
0.67%
FNS
40
0.67%
ANR
40
0.67%
PAL
39
0.65%
CYP90D1
38
0.64%
DFR
37
0.62%
SLS
35
0.59%
IO
33
0.55%
F3'5'H/CYP75A
33
0.55%
8HGO
30
0.5%
BBE
26
0.44%
COR
25
0.42%
BR6OX1/CYP85A1
24
0.4%
NCS
23
0.39%
CCoAOMT
23
0.39%
CYP51G1
23
0.39%
ADC
22
0.37%
CPD/CYP90A1
20
0.34%
TYDC_DDC
16
0.27%
ROT3/CYP90C1
16
0.27%
7DLH
15
0.25%
SQS/FDFT1
14
0.23%
CYP80B1
13
0.22%
LAMT
13
0.22%
TAT
13
0.22%
6OMT_4OMT_SOMT
12
0.2%
CYP719
12
0.2%
MPO
12
0.2%
HPPR
11
0.18%
FPPS
11
0.18%
DWF1
10
0.17%
ANS/LDOX
9
0.15%
CHI
8
0.13%
XMT_MXMT_DXMT
7
0.12%
CNMT
7
0.12%
ISY
7
0.12%
CPR
7
0.12%
DWF7
7
0.12%
AACT
7
0.12%
SMO1/SMO2
6
0.1%
GGPPS
6
0.1%
CMK/IspE
5
0.08%
MVK
5
0.08%
DXS
5
0.08%
ODC
4
0.07%
FLS
4
0.07%
FK
4
0.07%
HYD1
4
0.07%
DET2
4
0.07%
SQE
4
0.07%
HDS/IspG
4
0.07%
TDC
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
IDI
3
0.05%
MVD
3
0.05%
HMGS
3
0.05%
MDS/IspF
3
0.05%
HMGR
3
0.05%
MCT/IspD
2
0.03%
PMK
2
0.03%
CYP80F1
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 701 | 20 | UGT (261) | View species results |
| Alkaloid pathway | 581 | 23 | 7DLGT (118) | View species results |
| Phenylpropanoid pathway | 578 | 13 | POD (193) | View species results |
| Flavonoid pathway | 355 | 12 | UFGT (195) | View species results |
| Rosmarinic acid pathway | 220 | 7 | C4H (97) | View species results |
| Steroid pathway | 162 | 12 | CAS (69) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2163 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 483 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Csimscaffold600406570 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold7510449840 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold8590477170 | Alkaloid | TRI/TRII | low | borderline |
| Csimscaffold9240494960 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold9240494980 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold9240494990 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold9240495000 | Alkaloid | TRI/TRII | medium | pass |
| Csimscaffold9990512310 | Alkaloid | TRI/TRII | low | borderline |
| Csimscaffold1090020940 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold15310110560 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold17950148070 | Alkaloid | TYDC_DDC | low | borderline |
| Csimscaffold29460272000 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold29460272020 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold29460272030 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold29460272050 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold3730320250 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold4270347090 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold4270347100 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold4590360160 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold4590360170 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold4970373500 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold7460448300 | Alkaloid | TYDC_DDC | low | borderline |
| Csimscaffold7610452170 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold8770481780 | Alkaloid | TYDC_DDC | medium | borderline |
| Csimscaffold15950120010 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Csimscaffold2690250240 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Csimscaffold27670257760 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Csimscaffold35800312730 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Csimscaffold3760321450 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Csimscaffold5640395080 | Alkaloid | XMT_MXMT_DXMT | low | borderline |
| Csimscaffold7770456480 | Alkaloid | XMT_MXMT_DXMT | medium | borderline |
| Csimscaffold1000002100 | Flavonoid | 4CL | medium | pass |
| Csimscaffold10070003470 | Flavonoid | 4CL | medium | pass |
| Csimscaffold10470012360 | Flavonoid | 4CL | medium | pass |
| Csimscaffold10470012370 | Flavonoid | 4CL | medium | pass |
| Csimscaffold10930021860 | Flavonoid | 4CL | medium | pass |
| Csimscaffold11570035620 | Flavonoid | 4CL | medium | pass |
| Csimscaffold11570035650 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1180041390 | Flavonoid | 4CL | medium | pass |
| Csimscaffold120046340 | Flavonoid | 4CL | medium | pass |
| Csimscaffold12720059860 | Flavonoid | 4CL | medium | pass |
| Csimscaffold12720059870 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1310067830 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1310067840 | Flavonoid | 4CL | medium | pass |
| Csimscaffold13380072340 | Flavonoid | 4CL | low | borderline |
| Csimscaffold14350093300 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1490102620 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1580117790 | Flavonoid | 4CL | low | borderline |
| Csimscaffold1620124260 | Flavonoid | 4CL | medium | pass |
| Csimscaffold1620124270 | Flavonoid | 4CL | medium | pass |