PlantSME Plant secondary metabolism enzyme database

Calamus simplicifolius (calamus_simplicifolius)

Imported from atlas release summary for Calamus simplicifolius.

2844
Candidate Protein Records
2597
Pathway-Level Records
5967
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 701 20 UGT (261) View species results
Alkaloid pathway 581 23 7DLGT (118) View species results
Phenylpropanoid pathway 578 13 POD (193) View species results
Flavonoid pathway 355 12 UFGT (195) View species results
Rosmarinic acid pathway 220 7 C4H (97) View species results
Steroid pathway 162 12 CAS (69) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2163 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 483 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Csimscaffold9300496340 Rosmarinic Acid C4H low borderline
Csimscaffold9300496350 Rosmarinic Acid C4H low borderline
Csimscaffold9300496360 Rosmarinic Acid C4H low borderline
Csimscaffold9510501050 Rosmarinic Acid C4H low borderline
Csimscaffold9570502350 Rosmarinic Acid C4H low borderline
Csimscaffold9570502360 Rosmarinic Acid C4H low borderline
Csimscaffold9580502420 Rosmarinic Acid C4H medium pass
Csimscaffold9580502430 Rosmarinic Acid C4H medium pass
Csimscaffold960502820 Rosmarinic Acid C4H low borderline
Csimscaffold960502830 Rosmarinic Acid C4H low borderline
Csimscaffold960502870 Rosmarinic Acid C4H medium pass
Csimscaffold960502880 Rosmarinic Acid C4H medium pass
Csimscaffold9610503410 Rosmarinic Acid C4H low borderline
Csimscaffold9700505750 Rosmarinic Acid C4H low borderline
Csimscaffold9810508380 Rosmarinic Acid C4H low borderline
Csimscaffold9830508760 Rosmarinic Acid C4H low borderline
Csimscaffold9830508770 Rosmarinic Acid C4H medium pass
Csimscaffold9930511220 Rosmarinic Acid C4H low borderline
Csimscaffold14100088970 Rosmarinic Acid CPR medium pass
Csimscaffold16220124790 Rosmarinic Acid CPR medium pass
Csimscaffold16220124800 Rosmarinic Acid CPR medium pass
Csimscaffold2050183270 Rosmarinic Acid CPR medium pass
Csimscaffold2390221900 Rosmarinic Acid CPR medium pass
Csimscaffold4610361670 Rosmarinic Acid CPR medium pass
Csimscaffold4770366390 Rosmarinic Acid CPR medium pass
Csimscaffold11710039410 Rosmarinic Acid HPPR medium pass
Csimscaffold18240153060 Rosmarinic Acid HPPR medium pass
Csimscaffold25910241120 Rosmarinic Acid HPPR medium pass
Csimscaffold3170288500 Rosmarinic Acid HPPR low borderline
Csimscaffold3990332700 Rosmarinic Acid HPPR medium pass
Csimscaffold470364350 Rosmarinic Acid HPPR medium pass
Csimscaffold7400447070 Rosmarinic Acid HPPR medium pass
Csimscaffold7660453430 Rosmarinic Acid HPPR medium pass
Csimscaffold7690454150 Rosmarinic Acid HPPR medium pass
Csimscaffold7690454160 Rosmarinic Acid HPPR medium pass
Csimscaffold8100465680 Rosmarinic Acid HPPR medium pass
Csimscaffold11730040130 Rosmarinic Acid PAL low borderline
Csimscaffold19640170570 Rosmarinic Acid PAL medium pass
Csimscaffold20430182260 Rosmarinic Acid PAL low borderline
Csimscaffold230211590 Rosmarinic Acid PAL low borderline
Csimscaffold350307940 Rosmarinic Acid PAL medium pass
Csimscaffold350307950 Rosmarinic Acid PAL medium pass
Csimscaffold350307960 Rosmarinic Acid PAL low borderline
Csimscaffold4760366150 Rosmarinic Acid PAL low borderline
Csimscaffold6630423810 Rosmarinic Acid PAL high pass
Csimscaffold7800457600 Rosmarinic Acid PAL medium pass
Csimscaffold7800457610 Rosmarinic Acid PAL medium pass
Csimscaffold7800457640 Rosmarinic Acid PAL high pass
Csimscaffold7800457660 Rosmarinic Acid PAL high pass
Csimscaffold100001170 Rosmarinic Acid RAS medium pass