PlantSME Plant secondary metabolism enzyme database

Lagenaria siceraria (lagenaria_siceraria)

Imported from atlas release summary for Lagenaria siceraria.

1315
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.43% Alkaloid pathway 21.22% Phenylpropanoid pathway 18.63% Flavonoid pathway 15.44% Rosmarinic acid pathway 9.66% Steroid pathway 5.63%
Family Distribution
C4H 6.74% C3'H/CYP98A 6.01% BAHD 4.89% CYP76 4.71% UGT 4.35% 7DLGT 4.17% UFGT 4.05% IFS 3.53%
Other Families 61.55%
More Families (96)
4CL 111 3.35% POD 109 3.29% T3O 103 3.11% DWF4/CYP90B1 80 2.42% F3'H/CYP75B 79 2.39% F3H 67 2.02% NMT 58 1.75% BR6OX2/CYP85A2 57 1.72% CAS 49 1.48% STR 46 1.39% PAL 45 1.36% H6H 43 1.3% CAD 43 1.3% TPS 43 1.3% SGD 42 1.27% GES 39 1.18% CODM/T6ODM 39 1.18% SMT1/SMT2/SMT3 37 1.12% G8O/G8H 36 1.09% IO 36 1.09% HCT 36 1.09% IFR 35 1.06% CYP90D1 35 1.06% T16H 32 0.97% COMT 30 0.91% TRI/TRII 29 0.88% BBE 28 0.85% LAC 28 0.85% CYP71 28 0.85% F3'5'H/CYP75A 27 0.82% F5H/CYP84A 27 0.82% TAT 27 0.82% PYKS 25 0.76% 16OMT 25 0.76% GS 22 0.66% PMT 22 0.66% CSE 22 0.66% FNS 21 0.63% CYP51G1 19 0.57% 7DLH 18 0.54% CCR 18 0.54% BR6OX1/CYP85A1 17 0.51% SLS 16 0.48% 8HGO 14 0.42% ANS/LDOX 14 0.42% RAS 14 0.42% CNMT 13 0.39% ANR 13 0.39% CPD/CYP90A1 13 0.39% NCS 12 0.36% COR 11 0.33% CYP80B1 11 0.33% DFR 11 0.33% CHS 11 0.33% ROT3/CYP90C1 8 0.24% LAMT 7 0.21% MPO 7 0.21% HPPR 7 0.21% 6OMT_4OMT_SOMT 6 0.18% GGPPS 6 0.18% AACT 6 0.18% DXS 6 0.18% CYP719 5 0.15% CCoAOMT 5 0.15% CPR 5 0.15% DET2 5 0.15% SQE 5 0.15% SQS/FDFT1 5 0.15% FPPS 5 0.15% MVK 5 0.15% ODC 4 0.12% CHI 4 0.12% PMK 4 0.12% HMGR 4 0.12% TYDC_DDC 3 0.09% FLS 3 0.09% CPI1 3 0.09% SMO1/SMO2 3 0.09% DWF1 3 0.09% MVD 3 0.09% ISY 2 0.06% XMT_MXMT_DXMT 2 0.06% DWF5 2 0.06% HYD1 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% CMK/IspE 2 0.06% IDI 2 0.06% HDR/IspH 2 0.06% TDC 1 0.03% ADC 1 0.03% FK 1 0.03% DWF7 1 0.03% HDS/IspG 1 0.03% DXR 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 387 19 UGT (133) View species results
Alkaloid pathway 279 22 7DLGT (61) View species results
Phenylpropanoid pathway 245 11 POD (97) View species results
Flavonoid pathway 203 12 UFGT (123) View species results
Rosmarinic acid pathway 127 7 C4H (51) View species results
Steroid pathway 74 11 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1342 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 212 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
Lsic09G0008420.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Lsic09G0008810.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lsic09G0008820.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lsic09G0008870.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lsic09G0008880.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lsic09G0008890.1 Rosmarinic Acid 4CL medium pass 4CL__00001__sp_I3PB36_CNL_PETHY
Lsic09G0016140.1 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Lsic10G0002320.1 Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
Lsic10G0003310.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Lsic11G0007230.1 Rosmarinic Acid 4CL medium pass 4CL__00003__sp_M4ISH0_CCL1_HUMLU
Lsic11G0013370.1 Rosmarinic Acid 4CL low borderline 4CL__00015__sp_Q9LU36_4CL4_ARATH